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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgcatccttctttagacagaaatatcgctccctacccctgtctgattatctgcattcatgtgcag

Basic information

species Zea mays
transcript GRMZM2G052546_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g01750.5 (Oryza sativa), 5'ss of exon 4
CGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcg--tcgcatccttcttta-------------gacagaaatatcgctccctacccctgtctgattatctgcattcatgtgcag
 |||||| ||||||||||| || || |||||||||||||||||||||||||||||||| || || |||||||||||||| |||   |  ||||  |||  |             |  | ||| | | || | || | ||||||||||| ||||||||||||||||
TGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAGgttctcaaatatcatctatctcaaccaatttacagaaggaaaaaaaaacacttcttaactctgtctgattagctgcattcatgtgcag

upper sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G34370.1 (Glycine max), 5'ss of exon 5
CGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgc----------atccttctttaga------cagaaata--tcgctccctacccctgtctgattatctgcattcatgtgcag-
  ||||| ||||| |||||| | || |||||||| |||||||| || |||||||||||||| ||||| ||| |||||||  |  |             || | |  |   |      || |  ||  | | |||  ||  || | |  || ||| | |  |  | |   
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtattttttattcaattatggatacctgatcgaattctgtcaaatctagtttggtcctgacttctatttttttctctccctcaaattaccag

upper sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 5
CGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgcatccttctttagacagaaata---tcgctc---cctacccctgtctgattatctgcattcatgtgcag--------------
  ||||| ||||| |||||| | || |||||||| |||||||| || |||||||||||||| ||||| ||| |||||||  |  |       || |  | ||   | |    ||  ||    |||    || |      |||   ||  |||                  
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttgattcaattatggatacctgattgaattctgtcaaatctagttttgccctgacttctatttttttgtttcccctcaaattaccag

upper sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
CGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgcatccttctttagacagaaata-tcgctccctacccctgtctgattatctgcattcatgtgcag--------------
  ||||| ||||| ||||| || || ||||| ||||| ||||| || |||||||||||||| || || ||| |||||||| |           ||||||   || |  | |   |  |    |      ||| || || |||  |||                  
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcatttg-atttttgtttttcctccaaatggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148952817|gb|EC898809.2|EC898809
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|148970824|gb|EE021591.2|EE021591
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|15427195|gb|BI543017.1|BI543017
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|21621474|gb|BQ619480.1|BQ619480
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|67023551|gb|CO452300.1|CO452300
EST:     CAATTTCTTACGCCCANACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACCTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: CAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|211183157|gb|FL428740.1|FL428740
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|71435430|gb|DR816480.1|DR816480
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|76290045|gb|DV029613.1|DV029613
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|211478786|gb|FL377818.1|FL377818
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|76914764|gb|DV165677.1|DV165677
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|74234762|gb|DT642676.1|DT642676
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|149081546|gb|EE170685.2|EE170685
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|148967268|gb|EE018472.2|EE018472
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|211266638|gb|FL405762.1|FL405762
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|148934585|gb|EC878634.2|EC878634
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
EST: gi|91876121|gb|EB406078.1|EB406078
EST:     TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG                         AGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcg ... tcatgtgcagAGTCCACTTGATGTTGATAAGCTTCGGAAGATTGGTGTCAAAACTGTATTC