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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTCAGGGAACAACAGGTTGTGAGTGGTGCACTGGAAAACGCTTTAGGACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAGgtaactacttttcacccaagaacttactattgattgctagtctgctatttcaccactcatcaggttaacgacttcgacttttttttccag

Basic information

species Zea mays
transcript GRMZM2G052476_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052476_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 5'ss of exon 5
GCACTTCAGGGAACAACAGGTTGTGAGTGGTGCACTGGAAAACGCTTTAGGACCTAACGCC------GGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAGgtaactacttt---tcacc-------caagaacttactatt----gattgctagtctgctatttcaccactcatcaggttaacgacttcgacttttttttccag
      || ||| || |||||  || |||| || ||||| || ||| | ||||| |||||       | | |||||||| | |||   |||||||||||||||||||||||| ||||   | |||         |||| | || | |      ||  ||  |   ||  | | || |  | |  | ||          |||||||| |||
------CAAGGATCAGCAGGTCATGCGTGGCGCCCTGGAGAAAGCTCTGGGACCGAACGCTACTGCTGCTCCAGTCAACGTATCAAACGAGAATCCAATGCCAAAGgtaactcctttgcctaaccacatgaatgagaattcaccaattttaagtttttaaccccttacctgagcaatactgatctgaagataaaatggtttttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76292499|gb|DV032067.1|DV032067
EST:     GACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAG                         GCAGCTAATGAACTGATACGGGAGATTGCCACATTGGAGCTCGAGGTGAAG
genomic: GACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAGgtaactactt ... ttttttccagGCAGCTAATGAACTGATACGGGAGATTGCCACATTGGAGCTCGAGGTGAAG
EST: gi|148938780|gb|EC883115.2|EC883115
EST:     GACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAG                         GCAGCTAATGAACTGATACGGGAGATTGCCACATTGGAGCTCGAGGTGAAG
genomic: GACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAGgtaactactt ... ttttttccagGCAGCTAATGAACTGATACGGGAGATTGCCACATTGGAGCTCGAGGTGAAG
EST: gi|71430898|gb|DR811948.1|DR811948
EST:     GACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAG                         GCAGCTAATGAACTGATACGGGAGATTGCCACATTGGAGCTCGAGGTGAAG
genomic: GACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAGgtaactactt ... ttttttccagGCAGCTAATGAACTGATACGGGAGATTGCCACATTGGAGCTCGAGGTGAAG
EST: gi|71447120|gb|DR828170.1|DR828170
EST:     GACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAG                         GCAGCTAATGAACTGATACGGGAGATTGCCACATTGGAGCTCGAGGTGAAG
genomic: GACCTAACGCCGGTTCAGTCAACTTTTCACCAGAGAATCCAATGCCAAAGgtaactactt ... ttttttccagGCAGCTAATGAACTGATACGGGAGATTGCCACATTGGAGCTCGAGGTGAAG