1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTTTACAACTGAACCTTTTGCATGTGAACCATCGAGTCTTCCAAAATATCCTCCAAGCAAAGAAATAGATGTGAAAAGAAGAGACGAAGAAGCCAGACGgtttgtcaccttgccacttatttcattacttaggatgatccagtgtcataaacttatctactttgagtttgcagtaacaaacttgttgatctataaatgc...
species | Zea mays |
transcript | GRMZM2G052206_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTCCAAGCAAAGAAATAGATGTGAAAAGAAGAGACGAAGAAGCCAGACG TTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAGEST: gi|211184733|gb|FL162031.1|FL162031
genomic: CCTCCAAGCAAAGAAATAGATGTGAAAAGAAGAGACGAAGAAGCCAGACGgtttgtcacc ... tgttcaacagTTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAG
EST: GAAATAGATGTGAAAAGAAGAGASGAAGAAGCCAGACG TTTAAGSGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAG
genomic: GAAATAGATGTGAAAAGAAGAGACGAAGAAGCCAGACGgtttgtcacc ... tgttcaacagTTTAAGGGCTACTGGTGGTAGAGCTAACGGTGATGGAGCCAAGAAGACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTACAACTGAACCTTTTGCATGTGAACCATCGAGTCTTCCAAAATATCCTCCAAGCAAAGAAATAGATGTGAAAAGAAGAGACGAAGAAGCCAGACGgtttgtcaccttgccacttatttcattacttaggatgatccagtgtcataaacttatctactttgagtttgcagtaacaaacttgttgatctataaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC