Sequence
atgc intronic sequence ATGC exonic sequenceTTATCATATCCCTGAGCAACCCAAATATAGCATTGCTGTCACAGGGCTGATCAAAGATATGCTGGAAGCCTCACCAAATGCCAGACCAGACATCACACAGgcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttgcatgtagccctaggaatcaaataaattgttttctttggcttatgctatatgctgtatatttgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G051079_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g37880.3 (Oryza sativa), 5'ss of exon 5
TTATCATATCCCTGAGCAACCCAAATATAGCATTGCTGTCACAGGGCTGATCAAAGATATGCTGGAAGCCTCACCAAATGCCAGACCAGACATCACACAGgcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttgcatgtagccctaggaatcaaataa--attgttttctttggcttatgctatatgctgtatatttgacag
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TTATCGTATTCCAGAGCAACCCAAGTATAGTGCCGCTGTCACAAAGTTGATCAAAGATATGCTGGAAGCCTCTCCAAATGACAGACCTGATGTCACGCAGgcaagagctttgattgattggccattcatctccatgatact--aggttagtcatagactgttgcatgtagccttaggaaccacataagcatatttttctaaatctgatgttagactttgtacatttgacag
upper sequence: GRMZM2G051079_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 5'ss of exon 6
TTATCATATCCCTGAGCAACCCAAATATAGCATTGCTGTCACAGGGCTGATCAAAGATATGCTGGAAGCCTCACCAAATGCCAGACCAGACATCACACAGgcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttg-----catgt-agccctaggaatcaaataaattgttttctttggcttatgctatatgctgtatatttgacag
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CTACCGCATTCCAGAATTGCCAAAATACAGCTCGAATGTGACAGACCTAATCAGGGACATGCTGCAAGCTTCTCCAGACAATCGACCAGACATCACGCAGgcaagcgctttgcttgattggccattcatctccatg--actttaggttagttttagatggtttgagtccatgtcaacattaggggccaggaattttctgtctgcatgctaatgctgattcttttaatcatggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|101396493|gb|EB820173.1|EB820173EST: TCAAAGATATGCTGGAAGCCTCACCAAATGCCAGACCAGACATCACACAG GTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTA
genomic: TCAAAGATATGCTGGAAGCCTCACCAAATGCCAGACCAGACATCACACAGgcaagagctt ... tatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATCATATCCCTGAGCAACCCAAATATAGCATTGCTGTCACAGGGCTGATCAAAGATATGCTGGAAGCCTCACCAAATGCCAGACCAGACATCACACAGgcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttgcatgtagccctaggaatcaaataaattgttttctttggcttatgctatatgctgtatatttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG