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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggcttattttctcttaacaattttttttggccttgccgtgagccctacattttccgattcaatcaacctagctgacttagctcattgtgttgtag

Basic information

species Zea mays
transcript GRMZM2G050961_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050961_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g41710.1 (Oryza sativa), 5'ss of exon 5
GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggcttattttctct-taacaatt---ttttttggccttgcc-----gtgagccctacattttccgattcaatcaacctagc---tgacttagctcattgtgttgtag------------------------------------------------------------------------------------
||||||||||| ||||| |||||||||||||||| ||  ||   |||||  ||||   |   |||| ||| ||| |      ||   |||| | |      |   |  ||||||||     ||  |  | | |  |  | ||                                                                                     
GTTCTCTTCTCTGACATAAATGCTTATGAGgtaaatgaattggcttctccctaacggatacattttgtggtctttctcctaagtactccctccgtcccaaaaaaaaggcaacctagaaggggatgtgacccctcctagtataacgaatctgaaaggagggagtacgatgccttttttggtttttgttccagtcatctgaacgctcatggtattgcatgtacttgcag

upper sequence: GRMZM2G050961_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv15s0021g00830.t01 (Vitis vinifera), 5'ss of exon 6
GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggcttattttctcttaacaattttttttggccttgccgtgagccctacattttccgattcaatcaacctagctgacttagctcattgtgttgtag
||||| ||||||||||| |||||||||||||||| |  || | | | |   ||  |  ||| ||    | ||  | |     |  |  |    ||     ||  || ||     |    |   |  | |  
GTTCTTTTCTCAGACATAAATGCTTATGAGgtaaata-ctgactctgtagaaattaagtttattcatatagcacttaatatgatttactagcctttttcaaaggtacctttacaaatggaagttcctatcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13558469|gb|BG549825.1|BG549825
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTACATCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|148943634|gb|EC888698.2|EC888698
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|15198996|gb|BI423600.1|BI423600
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACCGATGATGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|148943633|gb|EC888697.2|EC888697
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|113796158|gb|DW913371.1|DW913371
EST:     AGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: AGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|166466537|gb|EG225135.1|EG225135
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGG
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGG
EST: gi|29577011|gb|CB617123.1|CB617123
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|211061029|gb|FL204116.1|FL204116
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAAAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|6342692|gb|AW165516.1|AW165516
EST:     GTTCTCTTCTCAG-CATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGACGAGAAGCACTGCTTCTGCCGTGAGTCAGNC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|29167933|gb|CB411193.1|CB411193
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|15499585|gb|BI596098.1|BI596098
EST:     GATCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTAC
EST: gi|13382241|gb|BG458916.1|BG458916
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|113799136|gb|DW919645.1|DW919645
EST:     CTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: CTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|29947167|gb|CB816515.1|CB816515
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|211058063|gb|FL204109.1|FL204109
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|32849976|gb|CD989657.1|CD989657
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGT
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGT
EST: gi|13558470|gb|BG549826.1|BG549826
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|6431818|gb|AW172022.1|AW172022
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGG-ACTGATGACGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|13237244|gb|BG355258.1|BG355258
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|29544990|gb|CB605168.1|CB605168
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGAAGAGAAGC-CTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
EST: gi|26559456|gb|CA831691.1|CA831691
EST:     GTTCTCTTCTCAGACATCAATGCTTATGAG                         GTGGAGCTTGGTACTGATGACGAGAAGCACTGCTTCTGCCGTGAGTCAGAC
genomic: GTTCTCTTCTCAGACATCAATGCTTATGAGgtaactggct ... tgtgttgtagGTGGAGCTTGGTACTGATGAAGAGAAGCACTGCTTCTGCCGTGAGTCAGAC