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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGATGCCGGCATCCCCTTCAATGTCCAGCCGAAGATGAAGGCCTTGGAAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAGgtatatagttggtggatttaaaacatagtacagagaaccgtctttagaacaccagacactaatagcggaggcgttctgtag

Basic information

species Zea mays
transcript GRMZM2G050077_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050077_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g21260.1 (Oryza sativa), 5'ss of exon 6
CAGCGATGCCGGCATCCCCTTCAATGTCCAGCCGAAGATGAAGGCCTTGGAAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAGgtatatagttggtggattt----aaaacatagtacagagaac-cgtctttagaacaccagaca-----ctaatagcggaggcgttctg-tag------------------------------------------------------
 || ||    || |||||||||||||  ||||| || ||||||||| ||||||| ||| ||||| | ||||| ||||||||||| |  ||||| |||||||||| ||     |  |||     | || |  | ||| ||| | | |        || | |  |     |  ||||    |||||  |  | |                                                      
AAGTGACATTGGTATCCCCTTCAATGAACAGCCAAAAATGAAGGCCGTGGAAATTGCGAAGAAGACAAGGGATGCCATCCTGAGTCGCAAATTTGATCAGgtatttaacaaataaattccttcagaagaacgaacaaagagctcataggccatgcatcgggtagacttcagatagatagggcgtgataattgttactagcagctaatccacttaataggcctaatgttattttggtcatttgttag

upper sequence: GRMZM2G050077_T03 (Zea mays), 5'ss of exon 5
lower sequence: EFJ26058 (Selaginella moellendorffii), 5'ss of exon 6
CAGCGATGCCGGCATCCCCTTCAATGTCCAGCCGAAGATGAAGGCCTTGGAAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAGgtatatagttggtggatttaaaacatagtacagagaaccgtctttagaacaccagacactaatagcggaggcgttctgtag
 |||||| | |||||| | ||||| |  ||||| |||||||| |||||||||||||   |||||||| |||||||||| || ||| |||| || ||||||||    |  |      ||| || | |   |  |    |  ||| |        ||                          
TAGCGATTCTGGCATCACTTTCAACGAGCAGCCAAAGATGAAAGCCTTGGAAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAGgt----aactccaaagtttgaatcgtgccatcgtattctttctct----tcttag--------------------------

upper sequence: GRMZM2G050077_T03 (Zea mays), 5'ss of exon 5
lower sequence: EFJ14459 (Selaginella moellendorffii), 5'ss of exon 6
CAGCGATGCCGGCATCCCCTTCAATGTCCAGCCGAAGATGAAGGCCTTGGAAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAGgtatatagttggtggatttaaaacatagtacagagaaccgtctttagaacaccagacactaatagcggaggcgttctgtag
 |||||| | |||||  | ||||| |  ||||| |||||||| |||||||||||||   |||||||| |||||||||| || ||| |||| || ||||||||    |  |      |||  | | |   |          ||||| |      ||                          
TAGCGATTCTGGCATTACTTTCAACGAGCAGCCAAAGATGAAAGCCTTGGAAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAGgt----aactccaaagtttgcatcgtcccatcttat----tctttcgcttcttag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31357578|gb|CD441935.1|CD441935
EST:     AAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAG                         GTAAGGGTCAACATTGCGAACGGAGATATGGTTGGCCATACAGGAGACATT
genomic: AAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAGgtatatagtt ... cgttctgtagGTAAGGGTCAACATTGCAAACGGAGATATGGTTGGCCATACAGGAGACATG