1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTGGAATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATGgtaatgagctttgtgtgtgtgtttttaagttgtttcttggtcactctatggacatgctgaatggtatatcattgctttggtcattgccag
species | Zea mays |
transcript | GRMZM2G047695_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATG TTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGEST: gi|149064130|gb|EE286426.2|EE286426
genomic: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATGgtaatgagct ... tcattgccagTTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGG
EST: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATG TTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGCTTGTAEST: gi|15209056|gb|BI430940.1|BI430940
genomic: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATGgtaatgagct ... tcattgccagTTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGCTTGTA
EST: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATG TTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGCTTGTAEST: gi|71449280|gb|DR830330.1|DR830330
genomic: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATGgtaatgagct ... tcattgccagTTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGCTTGTA
EST: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATG TTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGCTTGTAEST: gi|211474397|gb|FL070286.1|FL070286
genomic: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATGgtaatgagct ... tcattgccagTTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGCTTGTA
EST: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATG TTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGCTTGTA
genomic: AATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATGgtaatgagct ... tcattgccagTTGGCAGATGGCAATTTGGAACCAAAGAAGGAAGTTGCTACTAGGCTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTGGAATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTATGgtaatgagctttgtgtgtgtgtttttaagttgtttcttggtcactctatggacatgctgaatggtatatcattgctttggtcattgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC