Sequence
atgc intronic sequence ATGC exonic sequenceAGAACACTCCTAGCCATGCCTGAAAATGGTATTGGCCTGTTCCCAGATGTTGGCTTTGCTTACATTGGTGCAAAAGCACCAGGAGGGGGTGCAGTTGgtatggtccttgtaatttcccccttcctgtatcaattcatatagtaaggcctagtgctgtttatttcttcatctgtatattcttttccattgtaatatca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G047564_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g39344.2 (Oryza sativa), 5'ss of exon 5
AGAACACTCCTAGCCATGCCTGAAAATGGTATTGGCCTGTTCCCAGATGTTGGCTTTGCTTACATTGGTGCAAAAGCACCAGGAGGGGGTGCAGTTGgtatggtccttgtaatttcccccttcctgtatcaattcatatagtaaggcctagtgctgtttatttcttcatctgtatattctttt---ccattgtaatatca-
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AGGACGCTCCTGGCTATGCCAGAAAATGGTATTGGCTTGTTCCCGGACGTTGGCTTTGCTTACATTGGTGCCAAAGCTCCAGGAGGTGGTGCTGTTGgtaagattcttg--actatcttgtttcagtaac--cctgtagaaccatgtcttccgctactaattttgttaataatctatcatcataactcattttgagcttga
upper sequence: GRMZM2G047564_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 7
AGAACACTCCTAGCCATGCCTGAAAATGGTATTGGCCTGTTCCCAGATGTTGGCTTTGCTTACATTGGTGCAAAAGCACCAGGAGGGGGTGCAGTTGgtatggtccttgtaatttcccccttcctgtatcaattcatatagtaaggcctagtgctgtttatttcttcatctgtatattcttt-tccattgtaatatca
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AGAACTCTTCTTGCCATGCCAGAAAATGGAATTGGCTTGTTTCCAGATGTTGGATTTGCTTACATAGCAGCACAGAGTCCAGGAGAAGGATCAGTTGgtatgctttttgttatttaagagttttgatggtt-tgaggatggaaccttttatttagtttcacatcaaagtttttgtatctgctatctatcataggtccaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149055220|gb|EE156145.2|EE156145EST: TGTTGGCTTTGCTTACATTGGTGCAAAAGCACCAGGAGGGGGTGCAGTTG GAGTTTACCTTGGGATTACTGGAAAAAGGATATCATCACCTGCTGATGCTA
genomic: TGTTGGCTTTGCTTACATTGGTGCAAAAGCACCAGGAGGGGGTGCAGTTGgtatggtcct ... tgttttttagGAGTTTACCTTGGGATTACTGGAAAAAGGATATCATCACCTGCTGATGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAACACTCCTAGCCATGCCTGAAAATGGTATTGGCCTGTTCCCAGATGTTGGCTTTGCTTACATTGGTGCAAAAGCACCAGGAGGGGGTGCAGTTGgtatggtccttgtaatttcccccttcctgtatcaattcatatagtaaggcctagtgctgtttatttcttcatctgtatattcttttccattgtaatatca
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