1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGGGAAATTCTTCCTTTATGTCCAAGATTATAAGGAAAATGACCCAAGTACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTCgtgggtacctatttcacttatatgcctttttaacaatttttatatttttataactagaatgaaattgggtatttgcttatacaatttgaatttttagttc...
species | Zea mays |
transcript | GRMZM2G047431_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTC AAAATATGGTTTGGATGATAATACGATAGACTTCATTGGGCATGCAGTGGCEST: gi|33771056|gb|CF273350.1|CF273350
genomic: ACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTCgtgggtacct ... cttttttcagAAAATATGGTTTGGATGATAATACGATAGACTTCATTGGGCATGCAGTGGC
EST: ACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTC AAAATATGGTTTGGATGATAATACGATAGACTTCATTGEST: gi|32866625|gb|CF006307.1|CF006307
genomic: ACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTCgtgggtacct ... cttttttcagAAAATATGGTTTGGATGATAATACGATAGACTTCATTG
EST: ACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTC AAAATATGGTTTGGATGATAATACGATAGACTTCATTGGGCATGCAGTGGCEST: gi|148960309|gb|EE153565.2|EE153565
genomic: ACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTCgtgggtacct ... cttttttcagAAAATATGGTTTGGATGATAATACGATAGACTTCATTGGGCATGCAGTGGC
EST: ACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTC AAAATATGGTTTGGATGATAATACGATAGACTTCATTGGGCATGCAGTGGC
genomic: ACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTCgtgggtacct ... cttttttcagAAAATATGGTTTGGATGATAATACGATAGACTTCATTGGGCATGCAGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGGAAATTCTTCCTTTATGTCCAAGATTATAAGGAAAATGACCCAAGTACTCATAAGGGTTACAACCTTACTAAACTAACGACAAAAGAACTTATCTCgtgggtacctatttcacttatatgcctttttaacaatttttatatttttataactagaatgaaattgggtatttgcttatacaatttgaatttttagttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgaaa