Sequence
atgc intronic sequence ATGC exonic sequenceGGAGGGTGGTTTTGCCTCTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTGTATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatatgagattcacccccttactgcacattatttacaatttcagctcaataattggaccctgccttctttgttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G047310_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 3
GGAGGGTGGTTTTGCCTCTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTGTATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatatgagattcacccccttactgcacattatttacaatttcagctcaataattggaccctgccttctttgttcag---
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GGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGAAGTTTGAAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTTAGATTGAGACAGgtata----gtgttctctattatt-catgaacgtcataaattcagtgcgca---tgaagtttgacattttggtttgatag
upper sequence: GRMZM2G047310_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G21350.2 (Glycine max), 5'ss of exon 4
GGAGGGTGGTTTTGCCTCTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTGTATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatatgagattcacccccttactgcacattatttacaatttcagctcaataattggaccctgccttctttgttcag---
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AGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAGAGGGAAAAGAGTTGTAAGATTGAGACAGgtata----gtcttctctgttatt-catgaacttcattaattcagt---acgcatgaagtttgacattttgctttgacag
upper sequence: GRMZM2G047310_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 4
GGAGGGTGGTTTTGCCTCTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTGTATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatatgag-----attcacccccttactgcacattatttacaatttcagctcaataattggaccct--gccttctttgttcag
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AGAGGGAGGTGTTGCATCGGGATTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAGAGGAAAAAGAGTTGTCAGAATAAAACAGgcatagtgttctctattcatgtacttttcaaatgcagtgcacattcattgactaaaaatgtgatacaaagttttccttatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76284001|gb|DV023569.1|DV023569EST: AAACAC-GTTGTATATATGCAGAGGGAAGAGAGCTAATCGGGTTAAAGAG GTTCCCTTCGCCCGGTCGTCATTAAACCATGATGATGTGTTTGTCTTAGAT
genomic: AAACACGGTTGTATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatatgaga ... ctttgttcagGTTCCCTTCGCCCGGTCGTCATTAAACCATGATGATGTGTTTGTCTTAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGGGTGGTTTTGCCTCTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTGTATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatatgagattcacccccttactgcacattatttacaatttcagctcaataattggaccctgccttctttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT