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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGAAGCGCAAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatacaaggagagttgctaaagccataactgtgaataagcatgttgataatatactgtttgtttttcttttccttgcag

Basic information

species Zea mays
transcript GRMZM2G047219_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047219_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g01970.1 (Oryza sativa), 5'ss of exon 5
GTGTGGAAGCGCAAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatacaaggagagttgctaaagccataactgtgaataagcatgttgataatatactgt--ttgtttttcttttccttgcag---------------
|| |||||| | ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||  |||| | |  |  | ||   |||  ||||| |    |  |  |   | |  ||   |     |  |||| || |||                
GTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGgttgtaaagcaag-acatctcttgaaaatatagttgtgatttgtgaaatgcacgttgtcttgcagtctacataattttactagcacattagctttctagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148955762|gb|EC901460.2|EC901460
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|211142589|gb|FL359509.1|FL359509
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGGATAAAGATGGTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAG-ATAAAGATGGTGG
EST: gi|211529297|gb|FL356731.1|FL356731
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGGATAAAGATGGTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAG-ATAAAGATGGTGG
EST: gi|17931616|gb|BM268576.1|BM268576
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|149015400|gb|EE045246.2|EE045246
EST:     AGGCAGAACAGTACCCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AGGCAGAACAGTACC-TAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|12045929|gb|BF728159.1|BF728159
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|211072521|gb|FL326767.1|FL326767
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|148996959|gb|EE035773.2|EE035773
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|76293497|gb|DV033065.1|DV033065
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|211394348|gb|FL351051.1|FL351051
EST:     GGCAGAACAGTACCTAGCAGACTCCGGGTCTTC-ATTATACAATTATAAG                         AGCTGGCGGTTAACAAGATAAAGGATGGTGGCTTGC
genomic: GGCAGAACAGTACCTAGCAGACTCCGG-TCTTCCAT-ATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAG-ATGGTGGCTTGC
EST: gi|32940932|gb|CF045751.1|CF045751
EST:     ACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: ACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|148966373|gb|EE017367.2|EE017367
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTCCAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|89762676|gb|DY690164.1|DY690164
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|6742502|gb|AW313317.1|AW313317
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|71774203|gb|DR972081.1|DR972081
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
EST: gi|91055640|gb|EB166058.1|EB166058
EST:     AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAG                         AGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG
genomic: AAGGCAGAACAGTACCTAGCAGACTCCGGTCTTCCATATACAATTATAAGgttgtaatac ... ttccttgcagAGCTGGCGGTTTACAAGATAAAGATGGTGGCTTGCGAGAGTTGATTGTTGG