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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccgcaaccggcatccagtcgcttcctgtattttcgccttccttttggaaaccggcgctgcaaagtctgcaactgcaaccgtggctgactctggtctcctctcctcccgaactggtcag

Basic information

species Zea mays
transcript GRMZM2G047143_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047143_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g40940.2 (Oryza sativa), 5'ss of exon 3
ATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccgcaaccggcatccagtcgcttcctgtattttcgccttccttttggaaaccggcgctgcaaagtctgcaactgcaaccgtggctgactctggtctcctctcctcccgaactggtcag----
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||   |||  || |    |   | | || ||      |             |  | |  |||   || | |   || |||     | |  | |  |  |    |     | || |       
ATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagcgccattaccaccacctctacttcttcagtgttcagtgttcatcgcctctgctctcccccccaattcctcccagctcatccgcattcgtcgattgattgattgattgattgattgattttgcag

upper sequence: GRMZM2G047143_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT3G25980.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccgcaaccggcatccagtcgcttcctgtattttcgccttccttttggaaaccggcgctgcaaagtctgcaactgcaaccgtggctgactctggtctcctctcctcccgaactggtcag
   | ||||||||| || |||||||||||||||||||| || || || ||| | ||| | || ||  |  | || ||| | || || || || ||  ||||||||      ||||       ||   |||   ||  |     | || ||| ||||   |           |   |   |   |  |||  ||    | || |                      
TCGAGGGAGAAGAGTGATAAGGAGATCATGAGGGAGATTCAAGCTATTATGAGACAGGTTGCTTCAAGTGTTACTTACTTGCCTTGTCTTGATGAAACATgtaag------aaccaattcataggaactttgagtgat-----catcatttcggaactagtttgatttggattctcgtttttgattgtgcatgttgtttgtattag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94475185|gb|EB704143.1|EB704143
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTTGACGTGCTGGCCTACACGGACACGGACGTGGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32800674|gb|CD952910.1|CD952910
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32797390|gb|CD949626.1|CD949626
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32790500|gb|CD942736.1|CD942736
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGGGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32797842|gb|CD950078.1|CD950078
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32797599|gb|CD949835.1|CD949835
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|94475186|gb|EB704144.1|EB704144
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA