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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatcttctatatatagaaaagttgctgaagcaaaattcatattctatgtacagaaaggttgctgaggcaaaagtcatacttctagtgaccatat...

Basic information

species Zea mays
transcript GRMZM2G046098_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g64780.4 (Oryza sativa), 5'ss of exon 4
ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatctt---ctatatatagaaaagttgctgaagcaaa--attcatattctatgtacagaaaggttgctgaggcaaaagtcatacttctagtga-ccatat----------------------------------------------------
||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||| || || |     | ||||| ||| |  |  |||   | |  |   | | ||| |         | ||  | |   | | | ||| |      ||| || ||                                                     
ATCAAAACACAACAGCTTTTAAAGAAGTTGCGATAATTCGTCATCCACGTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatgtagggttctatatggaataaata-tgagttagattaacaaaaatctgttattgaggtgcttcgtcatagacatgccatgccatgtatgatccgtaataggtgcaactgtgcttgttcttatgttagtcttgtttgtgttctatggcag

upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G15360.2 (Glycine max), 5'ss of exon 5
ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatcttctatatatagaaaagtt-gctgaagcaaaattcatattctatgtacagaaaggttgctgaggcaaaagtcatacttctagtgaccatat
|||||||||| || || || ||||| || ||||| || ||||| || ||  ||||||||||||| |||||||| || |||||||| ||    || |||||||    |  | |   |||| |   ||| ||  |        |  | | || | |  |    | |  |  |   ||     | | ||    | |  || |
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCGTTTGGATTTATTACATCAACTGTTACTCTACAGgtaccctgtactgtcgctataaatttgtttgccaaccttgtgatggtttcctttctttattttgataac-aaattaacttcaacaatttctattattattt

upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatcttctatatatagaaaagtt-gctgaagcaaaattcatattctatgtacagaaaggttgctgaggcaaaagtcatacttctagtgaccatat-
|||||||||| || || || ||||| || ||||| || ||||| || ||  ||||||||||||||||||| || || |||||||| ||  | || ||||||||   |  | |   |||| |   |||  |  |      ||| |||||   |  | |     | ||   |  || |  | | |   || |  | || |  
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgtagtgtcactataaatttgtttaccaacctcttatttatattgattaaatatgtgtgatgagcaaccaca--taagagaacttgacatcacact

upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT1G43130.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgt-acttgatcttctatata--tagaaaagttgctg-aagcaaaattcatattctatgtacagaaaggttgctgaggcaaaagtcatacttctagtgaccatat
| ||||| || || || || ||||| || ||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||   |||||||| | ||  ||  | | | |  | | |||      | ||||||| |   || |   | |   |     ||  ||  | || ||                     
ACCAAAACACTACTGCCTTTAAAGAGGTAGCAATCATCCGTCACCCTCGTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAGgtcagttattcagcaacaaaactggtaaaacccaagtaagcaaattagttacttgctctcatgctttttttttgttgtaacag---------------------

upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv07s0031g02010.t01 (Vitis vinifera), 5'ss of exon 5
ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatcttctatatatagaaaagttgctgaagcaaaattcatattctatgtacagaaaggttgctgaggcaaaagtcatacttctagtgaccatat----
| |||||||| || ||||| ||||| || || || || |||||||||||  ||||||||||||||||||| || || |||||||| ||  ||||||||||||||  |    || ||||        | ||  |      ||||   | | ||  ||     |||   |||| |    |  | ||| |  |   |||||    
ACCAAAATACCACTGCTTTTAAAGAGGTAGCTATCATCCGTCATCCACGTGTTGGTGAATATGCATTTGGTTTTATTACATCAACAGTAATCCTTCAGgtactt--ttagata-atatgatttctcttcttgaaatttgttcaagctttttgctcaagtcagtttgagagg-atttttgttcctttttttattcatatgtga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51871157|gb|CV126041.1|CV126041
EST:     GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG                         ACTGACAAAGGCGACGAANAACTGTGTAGTGTGTATGTGCCAACAAATCAT
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: gi|211391866|gb|FL013594.1|FL013594
EST:     ATTGGTGAATATGCATTTGGGAT-CATAACATCAACGGTGGGTC-TTCAG                         ACTGACAA-GGCGACGAAGAACTGTGTAGTGTGTATGTGCCCACAA-TCA
genomic: ATTGGTGAATATGCATTTGG-ATTCATAACATCAACGGTGG-TCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCA
EST: gi|91053372|gb|EB163790.1|EB163790
EST:     GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG                         ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: gi|50323815|gb|CO518941.1|CO518941
EST:     GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG                         ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: gi|74239462|gb|DT647376.1|DT647376
EST:     GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG                         ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: gi|60398318|gb|DN231134.1|DN231134
EST:     GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG                         ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: gi|148944675|gb|EC889811.2|EC889811
EST:     GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG                         ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
EST: gi|148949550|gb|EC895017.2|EC895017
EST:     GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAG                         ACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT
genomic: GAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatc ... attattgcagACTGACAAAGGCGACGAAGAACTGTGTAGTGTGTATGTGCCAACAAATCAT