1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattctgactccctttcttttgtgtgtggttttgttgatccagcgacgcagatcttgaaacgttactacaccctatattttctgtgctattttaga...
species | Zea mays |
transcript | GRMZM2G044348_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|211345313|gb|FL467149.1|FL467149
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTGTTGCCTCAATACCTGGATEST: gi|71435689|gb|DR816739.1|DR816739
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|148948442|gb|EC893960.2|EC893960
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|149027788|gb|EE286084.2|EE286084
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTEST: gi|148991460|gb|EE032969.2|EE032969
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCT
EST: CAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCCTTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|148948218|gb|EC893734.2|EC893734
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|91875915|gb|EB405872.1|EB405872
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|149097124|gb|EE182936.2|EE182936
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTNCA-TACCTGGAEST: gi|166541555|gb|EG203293.1|EG203293
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCT-CAATACCTGGA
EST: CGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTGTTGCCTCAATACCTGGATEST: gi|149001048|gb|EE038297.2|EE038297
genomic: CGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|149100817|gb|EE186911.2|EE186911
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|78088713|gb|DV517106.1|DV517106
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|149067509|gb|EE157716.2|EE157716
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|148976595|gb|EE025942.2|EE025942
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGGGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTEST: gi|31360319|gb|CD444676.1|CD444676
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGGGGAGTTCACAAAGTCCCAGATTGTTGCCTCAATACCTGGATEST: gi|148943973|gb|EC889054.2|EC889054
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGATEST: gi|148930101|gb|EC872413.2|EC872413
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
EST: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT CACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
genomic: AAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattct ... gtttattcagCACTCTCGGTGGAGTTCACAAAGTCCCAGATTATTGCCTCAATACCTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACTgtatgattctgactccctttcttttgtgtgtggttttgttgatccagcgacgcagatcttgaaacgttactacaccctatattttctgtgctattttaga
- - - - - - - - - - - - - - - - - - - - AGTGGA