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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTATCAATGTTCTGCTGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccaacatgcttgtcttaagttcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctgcag

Basic information

species Zea mays
transcript GRMZM2G044246_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044246_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTATCAATGTTCTGCTGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccaacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctgcag
|||||| ||| |||| |||||||||||||||||||||||| |||  || ||||  ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   | |  ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   ||||||
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag

upper sequence: GRMZM2G044246_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTATCAATGTTCTGCTGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccaacatgcttgtcttaagt--tcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctgcag
|||| |||  ||||| || ||| ||||||||||||| ||  | |  || || |  ||||||||||||||||||||||||||   ||||||  | |||||||||        ||   |   ||  |||| | |   | ||  |    | | ||||  |||  |  |      ||| |  |||      ||  |     | ||||  |   |||
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag