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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACCGAGCCACTTCTTGTGGAGGTTGACCAGATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagttctctgctctgtgagagacagtacgttgtttaatagtttttcctggtatttcatgattttggtgtttgtaatttcctgtaacag

Basic information

species Zea mays
transcript GRMZM2G044027_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 5
ATGTCACCGAGCCACTTCTTGTGGAGGTTGACCAGATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgta-------tactagttctctg-ctctgtgagagacagtacgttgtttaatagttt--ttcctggtatttcatgatttt--ggtgtttgtaatttcctgtaacag
|||||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||       || ||  | | |  |||||| |    ||     |    ||  | | |  ||| ||   | |  |||| ||    ||  ||||   || |||| |||
ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgta-cag

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
ATGTCACCGAGCCACTTCTTGTGGAGGTTGACCAGATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagttctctgctctgtgagagacagtac-gttgttta--atagtttttcctggtattt-catgattttggtgtttgtaatttcctgtaacag----
||||||| |||| | |  |  | |||||||| || |||||||| ||||| ||||||||||| ||||||||||||||  |||| ||||| |||||      |||||  | |         | | | | ||  ||||  ||  |  |  | | | | | ||||||||   | ||    |      ||   ||    
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtggg--ggttcttagattctacttttatatttctgtcatttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 5
ATGTCACCGAGCCACTTCTTGTGGAGGTTGACCAGATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagttctctgctctgtgagagacagtacgttgtttaatagtttttcctgg-tatttcatgat-tttggtgtttgtaatttcctgtaacag----
|||| || ||| || |  |||| || || |||||||| ||||| || ||||| ||||||||||| || ||||||||| ||||| | || |||||| |||      ||   |   |||     || |  |||  |    ||||       ||   | ||   |||  | ||| |||  || |   |       
ATGTGACAGAGACATTATTTGTTGAAGTAGACCAGATTTATCATCTGGCTTGTCCTGCTTCACCCATTTTCTACAAGTACAATGCCGTGAAGgtaaactgtcaaactctaccaagagcattcgtcctgtgtagaccgtttttgggaaactaaagcgtgtcatttcatttttttaacgtcttcccaggatgac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6637013|gb|AW261285.1|AW261285
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|149097834|gb|EE183762.2|EE183762
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|14206834|gb|BG840512.1|BG840512
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|32909997|gb|CF014809.1|CF014809
EST:     ATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
genomic: ATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|6194647|gb|AW146751.1|AW146751
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|6020952|gb|AW065880.1|AW065880
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|211032180|gb|FL277400.1|FL277400
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|32850126|gb|CD989807.1|CD989807
EST:     TGCTTGTCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
genomic: TGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|40334152|gb|CK368222.1|CK368222
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTGCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGG
EST: gi|22473192|gb|BU037672.1|BU037672
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|213173372|gb|FM186537.1|FM186537
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|26558105|gb|CA830340.1|CA830340
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|148945878|gb|EC891170.2|EC891170
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|67016223|gb|CO444972.1|CO444972
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|67013235|gb|CO441984.1|CO441984
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|21987903|gb|BQ779431.1|BQ779431
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|32165003|gb|CD670321.1|CD670321
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
EST: gi|148951041|gb|EC896695.2|EC896695
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagt ... cctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAG