1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATCACACGGGACACATTGTTGATGAGAATGAAGAAATCACAGTGGCAAGATGTGATTGATTTGAATCTTACAGGCGTTTTCCTTTGCACGCAGgtatccccccacccccctacacccacacccacacccacacacattttgctcaacagttattgtttccatcttatatcaacatataccttgcag
species | Zea mays |
transcript | GRMZM2G043602_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCAAGATGTGATTGATTTGAATCTTACAGGCGTTTTCCTTTGCACGCAG GCTGCAACAAAAGTAATGATTAAGAAGAAAAAGEST: gi|50322350|gb|CO517476.1|CO517476
genomic: GGCAAGATGTGATTGATTTGAATCTTACAGGCGTTTTCCTTTGCACGCAGgtatcccccc ... taccttgcagGCTGCAACAAAAGTAATGATGAAGAAGAAAAAG
EST: TACAGGCGTTTTCCTTTGCACGCAG GCTGCAACAAAAGTAATGATGAAGAAGAAAAAGEST: gi|74240280|gb|DT648194.1|DT648194
genomic: TACAGGCGTTTTCCTTTGCACGCAGgtatcccccc ... taccttgcagGCTGCAACAAAAGTAATGATGAAGAAGAAAAAG
EST: GGCAAGATGTGATTGATTTGAATCTTACAGGCGTTTTCCTTTGCACGCAG GCTGCAACAAAAGTAATGATGAAGAAGAAAAAGEST: gi|50332234|gb|CO527360.1|CO527360
genomic: GGCAAGATGTGATTGATTTGAATCTTACAGGCGTTTTCCTTTGCACGCAGgtatcccccc ... taccttgcagGCTGCAACAAAAGTAATGATGAAGAAGAAAAAG
EST: GGCAAGATGTGATTGATTTGAATCTTACAGGCGTTTTCCTTTGCACGCAG GCTGCAACAAAAGTAATGATGAAGAAGAAAAAG
genomic: GGCAAGATGTGATTGATTTGAATCTTACAGGCGTTTTCCTTTGCACGCAGgtatcccccc ... taccttgcagGCTGCAACAAAAGTAATGATGAAGAAGAAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCACACGGGACACATTGTTGATGAGAATGAAGAAATCACAGTGGCAAGATGTGATTGATTTGAATCTTACAGGCGTTTTCCTTTGCACGCAGgtatccccccacccccctacacccacacccacacccacacacattttgctcaacagttattgtttccatcttatatcaacatataccttgcag
- - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG