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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATTCTGGAAATCCTATGGCCATAGATGGCTGTGCTACTTTTTTCCGCAGAGACAAGTTTTCGCATGTTAAAAAATACGAGgtatgatcacttctaggttcatagttattggctggttgcacctatctaattattgcacttttttgaatag

Basic information

species Zea mays
transcript GRMZM2G043509_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043509_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 5'ss of exon 5
GTGTATTCTGGAAATCCTATGGCCATAGATGGCTGTGCTACTTTTTTCCGCAGAGACAAGTTTTCGCATGTTAAAAAATACGAGgtatgatcacttctaggtt--------catagttattggctggttgcacctatctaa---ttattgcacttttttgaatag
|| ||| |||||  ||||   ||||| ||||||||||| || |||||||| |||||||| ||||| || ||||||||||| |||||| |  |||| ||   ||         ||  | ||  || || |||| ||||||||   || ||| || |  |||   ||
GTATATACTGGAGCTCCTCATGCCATCGATGGCTGTGCCACCTTTTTCCGTAGAGACAAATTTTCACACGTTAAAAAATATGAGgtacggccactgctgatttgagagtggtatgctaatctgcaggctgcagctatctaatatttcttgtacctggttgttcag

upper sequence: GRMZM2G043509_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G15980.2 (Glycine max), 5'ss of exon 4
GTGTATTCTGGAAATCCTATGGCCATAGATGGCTGTGCTACTTTTTTCCGCAGAGACAAGTTTTCGCATGTTAAAAAATACGAGgtatgatcacttctaggttcatagttattggct---ggttgcacctatctaattattgcacttttttgaatag--
|||||   ||| ||  | |   | || ||||| ||||| || |||||||| |||||||  ||||| |||||||| |||||||||||  |        | ||   || ||  ||   |   | ||| ||  |  | |  ||      |  ||| ||    
GTGTACAGTGGCAACACAAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTTAAGAAATACGAGgttgggaattgatttggcatatggtagttcaattatgtttgtacacaaattagaatgatgtgtgcttgcatgcag