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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacctgcaaatcaccattgtccattcataagctatcaggttgacccgaccacattctcattactgatatcattttgttttggttcag

Basic information

species Zea mays
transcript GRMZM2G043198_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043198_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 5'ss of exon 3
ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttata------aacctgca----aatcaccattgtccattcataagctatcaggttgacccgaccacattctcattactgatatcattttgttttggttcag
||||| ||||||||| | ||||| |||||||| ||||||||||| || || || ||||| ||||| |||      ||||| |      | | |   |||||| ||||||||    ||  |||| |   ||||||   | |||||||||  ||   || || |||||
ATATCGAAGGGTTTGTTAGACAAATATGGCCCTGATAGGGTTCTTGACACACCAATCACAGAGgtgatactcttaaaccttctgagtgaccgctggtgtccactcataagcagctagagtgacgcagtcacattga-agtactgatatgtttgcattctg-ttcag

upper sequence: GRMZM2G043198_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G46380.2 (Glycine max), 5'ss of exon 5
ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgt-tataaacctgcaaatcaccattgtc-cattcataagctatcaggttgacccgacca-cattctcattactgatatcattttgttttggttcag----
|||||||||||  |||| ||||||||||||||||| ||||||||||||||||| ||||||||||| | |   | | |     ||  || |  |||||      |  |    ||     || | |  |        |   ||   ||  ||     |  |    
ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtcttttttcttacttgatactttttttgcattctccttttcactcactggatttactaacgctgatgcctttcggatgcattccttccaactgtgttct

upper sequence: GRMZM2G043198_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G36540.3 (Glycine max), 5'ss of exon 5
ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacct-gcaaatcaccat-tgtccattcataagctatcaggttgacccgaccacat--tctcattactgatatcatt--ttgttttggttcag-
|||||||||||  |||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||    ||  |  |  ||  | | | || ||     | |||         |   |      |||| | ||||   | |||  | ||  ||| |    
ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttcttacttaatactttatttgcaatctccttccatccctccttttcactctttgcatctcttcactggatttattaatggtgatggatggct

upper sequence: GRMZM2G043198_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 5
ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacct------gcaaatcaccattgtccattcataagctatcaggttgacccgaccacattct-cattactgatatcattttgttttggttcag--
|||||||||||  |||| || |||| ||||||||| |||||||| |||||||| ||||||||||| ||    ||        |  | |      ||  ||||   | | |    | |    | |       | |||| ||  |   | | |||| |  ||||   
ATATCCAAGGGGCTGCTCGAAAAGTTTGGCCCCGAGAGGGTTCTTGATACTCCAATCACTGAGgtcatttttcttacttcatactttatttgcatctcttcactggatttataatggtgatggctttgggatgcattcct--tccaactgtgttgttcttcatgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211444057|gb|FL415432.1|FL415432
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211273080|gb|FL371948.1|FL371948
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGAC-T
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211491514|gb|FL426447.1|FL426447
EST:     TGCTTGACAAGTATGGCCCCGATAGG-TTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGAC-T
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211003333|gb|FL404181.1|FL404181
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|148930818|gb|EC873192.2|EC873192
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211084499|gb|FL378037.1|FL378037
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|32828890|gb|CD968568.1|CD968568
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|32799489|gb|CD951725.1|CD951725
EST:     TGCTTGACAAGTATGGCCCGGGTAGGGTTCTTGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|32804720|gb|CD956956.1|CD956956
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|38687965|gb|CK144996.1|CK144996
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTAGGTGCCGCTTACCAATGGTCTTCGACC
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCA-TGGTCTTCGACC
EST: gi|93281968|gb|EB674232.1|EB674232
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211431560|gb|FL401076.1|FL401076
EST:     GCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGNCGCTTACCATGGTCTTCGACC
genomic: GCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTG-AGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACC
EST: gi|211311674|gb|FL419261.1|FL419261
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211503999|gb|FL380203.1|FL380203
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211056917|gb|FL385087.1|FL385087
EST:     GCTTGACAAGTATGGCCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGG
genomic: GCTTGACAAGTATGGCCCC-GATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGG
EST: gi|211395332|gb|FL395257.1|FL395257
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211017664|gb|FL418154.1|FL418154
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211499368|gb|FL394923.1|FL394923
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211423792|gb|FL402788.1|FL402788
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211063939|gb|FL426137.1|FL426137
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|32828953|gb|CD968631.1|CD968631
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211099620|gb|FL375433.1|FL375433
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTANCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211542664|gb|FL412592.1|FL412592
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211054277|gb|FL399886.1|FL399886
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGA
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGA
EST: gi|211479962|gb|FL426376.1|FL426376
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|31357689|gb|CD442046.1|CD442046
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGGCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|20507600|gb|BQ279700.1|BQ279700
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
EST: gi|211530195|gb|FL395784.1|FL395784
EST:     TGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCAT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCAT
EST: gi|211016844|gb|FL388973.1|FL388973
EST:     TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAG                         GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT
genomic: TGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACTCCGATCACTGAGgttataaacc ... tttggttcagGCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCT