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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCAGTTTAGCTGCTGTCTCGCTGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcattgtttaaatccatttgtttttagtccatttttaggtgacttacattttccattttttgttgcag

Basic information

species Zea mays
transcript GRMZM2G042099_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042099_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g54784.1 (Oryza sativa), 5'ss of exon 10
GTTGCCAGTTTAGCTGCTGTCTCGCTGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcattgttta---------------aatccatttgttt-ttagtccatttttaggtgacttac-----attttccat--tttttgttgcag
||||| ||||||||| |||| || ||||| ||||||||||| || |||||||| |||||||| || |||||||||||||||    | | ||               |    |  | |    |||    || ||   |  || |      |||| | ||  || |||||||||
GTTGCAAGTTTAGCTACTGTGTCACTGATTTGTTTCTCGTCGTCCGCTATACTAGCACTTGTTACCAATGTTCCAgtaagtctgatttatacaataatagctgagtagctgacatatccactagctggttcttgaattgctaaatatcaatttgctatacttcttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71301931|gb|DR787043.1|DR787043
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|91053130|gb|EB163548.1|EB163548
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|71770870|gb|DR968807.1|DR968807
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|71313708|gb|DR793441.1|DR793441
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|71301929|gb|DR787042.1|DR787042
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|78021692|gb|DV490079.1|DV490079
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|149088757|gb|EE177881.2|EE177881
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|6859834|gb|AW355828.1|AW355828
EST:     TGATCTGTTTCTCGTCTTGTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|6828037|gb|AW331680.1|AW331680
EST:     GTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: GTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|60345336|gb|DN212309.1|DN212309
EST:     ATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTATTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: ATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|94478108|gb|EB707066.1|EB707066
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|88749980|gb|DY534121.1|DY534121
EST:     TTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|91053129|gb|EB163547.1|EB163547
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|91052960|gb|EB163378.1|EB163378
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|78179907|gb|DV550280.1|DV550280
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|91873772|gb|EB403729.1|EB403729
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|60354545|gb|DN221518.1|DN221518
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|78079632|gb|DV508044.1|DV508044
EST:     TGATCTGTTTCTCGTCTTTTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|78105386|gb|DV523804.1|DV523804
EST:     TGATCTGTTTTTCGTCTTTTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|5525617|gb|AI861510.1|AI861510
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCANCAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|91052961|gb|EB163379.1|EB163379
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|148962185|gb|EE013000.2|EE013000
EST:     TGATCTGTTTTTCGTCTTTTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
EST: gi|149089186|gb|EE178375.2|EE178375
EST:     TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCA                         GTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT
genomic: TGATCTGTTTCTCGTCTTCTGCTATACTTGCACTTGTGACTAATGTTCCAgtaagttcat ... tttgttgcagGTGCTTTTGTATTGGTACTCAACAGATGTGGACATCATCAACAATGCTGTT