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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAAAGCGGCGCATATATGACATTACCAATGTCCTTGAAGGCATTGGACTAATAGAGAAGACACTTAAGAATAGAATCCGTTGGAAgtaagcttagctttattcctttgaccctttttttcctgtattatgatgcaaccttatctcagtaactcttgcaattcctatttgtgatgctaatctcgcatgacactatag

Basic information

species Zea mays
transcript GRMZM2G041701_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G041701_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g33430.2 (Oryza sativa), 5'ss of exon 4
GTTCAAAAGCGGCGCATATATGACATTACCAATGTCCTTGAAGGCATTGGACTAATAGAGAAGACACTTAAGAATAGAATCCGTTGGAAgtaagcttagctttattcctttgaccctttttttcctgtattatgatgcaaccttatctcagtaactcttgcaattcctatttgtgatgctaatctcgcatgacactatag
|||||||| ||||| |||||||| ||||||||||| |||||||| || ||  | || || |||||||| ||||| ||||||||||||||||||||  |  ||||||||||| |||||| | ||||| ||||   |    | ||||| ||  |||| |||  |        |||| || |||||||| ||  ||| |  ||
GTTCAAAAACGGCGTATATATGATATTACCAATGTACTTGAAGGAATAGGGTTGATTGAAAAGACACTCAAGAACAGAATCCGTTGGAAgtaagc--acttttattcctttaacccttatcttcctttattgccacctgatcttatttctttaacccttaaa--------ttgtcattctaatctcacacaacatttcag

upper sequence: GRMZM2G041701_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv06s0080g01110.t01 (Vitis vinifera), 5'ss of exon 5
GTTCAAAAGCGGCGCATATATGACATTACCAATGTCCTTGAAGGCATTGGACTAATAGAGAAGACACTTAAGAATAGAATCCGTTGGAAgtaagcttagctttattcctttgaccctttttttc--ctgtattatgatgcaacc--ttatctcagtaactcttgcaattcctatttgtgatgctaatctcgcatgacactatag
|| || ||| |||| ||||||||||| || |||||||||||||| ||||| || || |||||||   | ||||||||||| |  |||||||| |   |  ||   || |||     || |||     ||| ||   |||  |    ||| ||||  |  |   | | | |  |   || |    | | | | |           
GTACAGAAGAGGCGTATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATTGAGAAGAAGTTGAAGAATAGAATTCAGTGGAAgtatgaaaatattctgtcatttactttttatttaaagttgttttgaaatgttaataattacctcaacacgtgaagaattactcaaaagttaattgatttttgtag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211090511|gb|FK961028.1|FK961028
EST:     AATAGAGAAGACACTTAAGAATAGAATCCGTTGGAA                         GGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCA
genomic: AATAGAGAAGACACTTAAGAATAGAATCCGTTGGAAgtaagcttag ... gacactatagGGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCA
EST: gi|211090513|gb|FK961030.1|FK961030
EST:     AATAGAGAAGACACTTAAGAATAGAATCCGTTGGAA                         GGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCA
genomic: AATAGAGAAGACACTTAAGAATAGAATCCGTTGGAAgtaagcttag ... gacactatagGGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCA