Sequence
atgc intronic sequence ATGC exonic sequenceGTTCAATATCCTGGATTGGAGCAGCGAATGAAGATAGACATTATGACAATGTCATTCTTGTCAAAAATGGTCTCTTGGgtatgaacaccaacattttgtttcctttttattgtgcaatgcaaagaagagcacgacttggtgcagtggtgagtgcatggtttttaaagcggtaaggcgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G040720_T05 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g34830.1 (Oryza sativa), 5'ss of exon 4
GTTCAATATCCTGGATTGGAGCAGCGAATGAAGATAGACATTATGACAATGTCATTCTTGTCAAAAATGGTCTCTTGGgtatgaacaccaacattttgtttcctttttattgtgcaatgcaaagaagagcacgacttggtgcagtggtgagtgcatggtttttaaagcggtaaggcgg
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GTTCAATATCCTGGGCTTGAGCGGCGCATGAAGATAGACATAATGACTATGTCTTTCTTGTCAAAATCTGTCTCTTGGgtatgt-tacatgtatcaattttgcgatttccattgatttgcaaattgaatattttgtgcatgcag----------------------------------
upper sequence: GRMZM2G040720_T05 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g34750.1 (Oryza sativa), 5'ss of exon 7
GTTCAATATCCTGGATTGGAGCAGCGAATGAAGATAGACATTATGACAATGTCATTCTTGTCAAAAATGGTCTCTTGGgtatga-acac----caacattttgtttcctttttattgtgcaatgcaaagaagagcacgacttggtgcagtggtgagtgcatggtttttaaagcg-gtaaggcgg
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GTTCAATATCCTGGGCTTGAGCGGCGCATGAAGATAGACATAATGACTATGTCTTTCTTGTCAAAATCTCTCTCTTGGgtatgttacatgtttcaattttgcgatttccattgatt-tgcaaaattgtattttgtgcatgtagctcattttacatgaaaactattttttacccatgtaa-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31351515|gb|CD435872.1|CD435872EST: TGAAGATAGACATTATGACAATGTCATTCTCGTCAAAAATGGTCTCTTGG GTTTTTCCTGATTATAAATTTGACAGAATACTAATTGAATTTGAGAAATCC
genomic: TGAAGATAGACATTATGACAATGTCATTCTTGTCAAAAATGGTCTCTTGGgtatgaacac ... ttctgtgcagGTTTTTCCTGATTATAAATTTGACAGAATACTAATTGAATTTGAGAAATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCAATATCCTGGATTGGAGCAGCGAATGAAGATAGACATTATGACAATGTCATTCTTGTCAAAAATGGTCTCTTGGgtatgaacaccaacattttgtttcctttttattgtgcaatgcaaagaagagcacgacttggtgcagtggtgagtgcatggtttttaaagcggtaaggcgg
- - - - - - - - - - - - - - TGAAGA