1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTGGAGCGACAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgacttgcctcctcattctccattttaattaccaacaactattcatagagactgaagtttattttctggatttgaccaatgtgcatgcag
species | Zea mays |
transcript | GRMZM2G039954_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211071802|gb|FK959273.1|FK959273
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|18181111|gb|BM382321.1|BM382321
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211066314|gb|FK959237.1|FK959237
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTMAGAAGTTCCTGAGCGCATATEST: gi|211302619|gb|FL366312.1|FL366312
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGYTCCTGAGCGCATATEST: gi|211454670|gb|FK959205.1|FK959205
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211071805|gb|FK959276.1|FK959276
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: AAAGGCAGAGTTCTTCTGCAAGACATTCCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211450408|gb|FK959184.1|FK959184
genomic: AAAGGCAGAGTTCTTCTGCAAGACATTC-GAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAEST: gi|211454673|gb|FK959208.1|FK959208
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAA-TTTGGATGCTGCTAAGAAGTTCCTGAGCGCATA
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATACEST: gi|211074529|gb|FK959279.1|FK959279
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211456805|gb|FK959224.1|FK959224
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211452548|gb|FK959198.1|FK959198
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGTTGCTAAGAAGTTCCTGAGCGCATATEST: gi|116824448|gb|EC868068.1|EC868068
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211454677|gb|FK959212.1|FK959212
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGACAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGT-CCTGAGCGCATATEST: gi|211069063|gb|FK959256.1|FK959256
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211452546|gb|FK959196.1|FK959196
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211066317|gb|FK959240.1|FK959240
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: AAAGGCAGAGTTCTTCTGCAAGACATTCGGAAGAAGTTCATGAGAAACTT GTTCACAGGAGAGCTGAATTTGGATGCTGCTEST: gi|211069066|gb|FK959259.1|FK959259
genomic: AAAGGCAGAGTTCTTCTGCAAGACATTCG-AAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAG-AGAGCTGAATTTGGATGCTGCT
EST: CAAAGACAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211450407|gb|FK959183.1|FK959183
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: AAAGGCAGAGTTCTTCTGCAAGACATTCNGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTTGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211069060|gb|FK959253.1|FK959253
genomic: AAAGGCAGAGTTCTTCTGCAAGACATTC-GAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGACAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211452538|gb|FK959188.1|FK959188
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGARGCGCATAEST: gi|211069062|gb|FK959255.1|FK959255
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGA-GCGCATA
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAEST: gi|211452540|gb|FK959190.1|FK959190
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAA
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATATEST: gi|211452543|gb|FK959193.1|FK959193
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAEST: gi|211452550|gb|FK959200.1|FK959200
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTT-CACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATA
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCEST: gi|211066311|gb|FK959234.1|FK959234
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGC
EST: AAAGGCAGARTTCTTCTGCAAGACATTCCGAAGAAGTTCATGAGAAACYT GTTCACAGAGAGCTGAATTTGGATGCEST: gi|116813303|gb|EC855734.1|EC855734
genomic: AAAGGCAGAGTTCTTCTGCAAGACATTC-GAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGC
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAGGAAGTTCCTGAGCGCATATEST: gi|211454668|gb|FK959203.1|FK959203
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCGTGAGCGCATATEST: gi|211074535|gb|FK959285.1|FK959285
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGCTGAATTTGGATGCTGCTAAGAAGTTCCTGAGCGCATAT
EST: CAAAGGGMGAGTTCTTCTGCMAGACATTCGAAGAAGTTCATGAGAAACTT GTTCACAGAGAGCCTGAATTTGGATGCTGC
genomic: CAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgactt ... gtgcatgcagGTTCACAGAGAGC-TGAATTTGGATGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGAGCGACAAAGGCAGAGTTCTTCTGCAAGACATTCGAAGAAGTTCATGAGAAACTTgtaccgacttgcctcctcattctccattttaattaccaacaactattcatagagactgaagtttattttctggatttgaccaatgtgcatgcag
- - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AGAAGT