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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACTTCATCCACAACCATTTGTCATTTACGGTGAAGTATCACAGGGATGATAATTCAGAACTTTCCAGAATAGTGGGATTTGAGGTCAACCCACTCAGgtttacttcaaactttgtctggcaggatttattcttctcatgctttatgaaatgggtctaag

Basic information

species Zea mays
transcript GRMZM2G039811_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039811_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g38530.1 (Oryza sativa), 5'ss of exon 5
AATACTTCATCCACAACCATTTGTCATTTACGGTGAAGTATCACAGGGATGATAATTCAGAACTTTCCAGAATAGTGGGATTTGAGGTCAACCCACTCAGgtttacttcaaactttgtctggcaggatttattcttctcatgctttatg-aaatgggtctaag------------------------------
| |||||||| ||||||||||||||||||   |||||||| |||| ||| ||| ||||||||||||| ||||||||||||||||||||||| |||  ||||||| |||   |||||||         |||    | |  ||||| |||  ||||| | ||||                               
AGTACTTCATTCACAACCATTTGTCATTTTTAGTGAAGTACCACAAGGACGATGATTCAGAACTTTCTAGAATAGTGGGATTTGAGGTCAAGCCATACAGgttttctttctactttgtgctttgatgttttacttgcatatgctctatataaatgagcctaatgcatgtgttatttatatactgttatggcag