1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCGCCTTCCGAAGCCAAAAGGGCAGACAGTTGCATCTTTCAGGAAGGGTCTTGCCATGCTTCCAAATGCCATTACATCCAGgtttgttctttttttttttgtatatttactaacaaacatatccgtgtattagtgtattacaacgaaatgtatatcttgttacactgtcacctgaacgact...
species | Zea mays |
transcript | GRMZM2G039396_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCATCTTTCAGGAAGGGTCTTGCCATGCTTCCAAATGCCATTACATCCAG CTTGGGTAGTAAAGTCAAACTATCATGGAAACTCACGAGCATTACAAAATCEST: gi|78079002|gb|DV507414.1|DV507414
genomic: GCATCTTTCAGGAAGGGTCTTGCCATGCTTCCAAATGCCATTACATCCAGgtttgttctt ... tcatttacagCTTGGGTAGTAAAGTCAAACTATCATGGAAACTCACGAGCATTACAAAATC
EST: CATCTTTCAGGAAGGGTCTTGCCATGCTTTCCAA-TGCCATTACATCCAG CTTGGGTAGTAAAGTCAAACTATCATGGAAACTEST: gi|213183994|gb|FM183521.1|FM183521
genomic: CATCTTTCAGGAAGGGTCTTGCCATGCTT-CCAAATGCCATTACATCCAGgtttgttctt ... tcatttacagCTTGGGTAGTAAAGTCAAACTATCATGGAAACT
EST: GCATCTTTCAGGAAGGGTCTTGCCATGCTTCCAAATGCCATTACATCCAG CTTGGGTAGTAAAGTCAAACTATCATGGAAACTCACGAGCATTACAAAATCEST: gi|67020129|gb|CO448878.1|CO448878
genomic: GCATCTTTCAGGAAGGGTCTTGCCATGCTTCCAAATGCCATTACATCCAGgtttgttctt ... tcatttacagCTTGGGTAGTAAAGTCAAACTATCATGGAAACTCACGAGCATTACAAAATC
EST: GCATCTTTCAAGAAGGGTCTTGCCATGCTTCCAAATGCCATTACATCCAG CTTGGGTAGTAAAGTCAAACTATCATGGAAACTCACGAGCATTACAAAATC
genomic: GCATCTTTCAGGAAGGGTCTTGCCATGCTTCCAAATGCCATTACATCCAGgtttgttctt ... tcatttacagCTTGGGTAGTAAAGTCAAACTATCATGGAAACTCACGAGCATTACAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCCTTCCGAAGCCAAAAGGGCAGACAGTTGCATCTTTCAGGAAGGGTCTTGCCATGCTTCCAAATGCCATTACATCCAGgtttgttctttttttttttgtatatttactaacaaacatatccgtgtattagtgtattacaacgaaatgtatatcttgttacactgtcacctgaacgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaca