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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACAAACTTGGAAAAGAATCCCTTATCAACTCTGCAAAAACTAGCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttctatggtcattttgtctttaggttacttagaactaggtggttctctacctggttcgtttagccttgttggttcatgtacacagtattgctttc...

Basic information

species Zea mays
transcript GRMZM2G039263_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039263_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 5'ss of exon 7
GTTGACAAACTTGGAAAAGAATCCCTTATCAACTCTGCAAAAACTAGCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttc-tatggtcattt-tgt-ctttaggttacttagaactaggtggttctctacctggttcgtttagccttgttggttcatgtacacagtattgctttc
||||| ||||||||||| || || ||||| |||| ||| || || |||||||| |||||  ||||||||||||||||||||||||| |||| | |||||||||| ||| | ||| | | | | || |  |  | ||   || ||     | ||         ||||   ||        || ||     || |      
GTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATGTCCTCGAAGCTGATTAATAGTGACAGTGATTTCTTCGCAAATCTGgtaagttcctattgccatatatatacatttgtattttcagctgtaagtttgattttagtgatactttttaaatttaaataaatatttagttgatactcta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211239408|gb|FL328610.1|FL328610
EST:     TCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: TCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|33104341|gb|CF064301.1|CF064301
EST:     GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|211149768|gb|FL359580.1|FL359580
EST:     TAGTGACAGTGATTTCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: TAGTGACAGTGATTTCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|19058770|gb|BM737437.1|BM737437
EST:     GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|67021395|gb|CO450144.1|CO450144
EST:     GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|33092579|gb|CF052573.1|CF052573
EST:     GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGCGAAGACTGCAAATGCCAAGGGAGACGTG
genomic: GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|211195400|gb|FL324707.1|FL324707
EST:     TCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: TCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|33102590|gb|CF062550.1|CF062550
EST:     GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|22490780|gb|BU050703.1|BU050703
EST:     GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
EST: gi|61119168|gb|DN560129.1|DN560129
EST:     GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTG                         GTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG
genomic: GCATGTCTTCGAAATTGATTAATAGTGACAGTGATTTCTTTGCAACTTTGgtaagttcta ... gatttcttagGTTGTTGAGGCAGTTCAAGCCGTGAAGACTACAAATGCCAAGGGAGACGTG