1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTTAAACAGCATACTTTGGTATCTGGTGGTGTTAGAGGAACCTTACCGTGGATGGCACCAGAGCTTCTGAGTGGGAAAAACAATATGGTGTCAGAGAAGgtaagactgctttgccttgtcactacaattattagaccatattaaaacaatgccccacttttttgcgttctatcacagactatttttatgtatcttgtag
species | Zea mays |
transcript | GRMZM2G039106_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGATGGCCCCAGAGCTTTTGAGTGGGAAAAACAATATGGTGTCAGAGAAG ATTGACGTCTATTCGTTTGGAATTGTCATGTGGGAACTGCTTACTGGGGAAEST: gi|83278980|gb|DV942988.1|DV942988
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAACAATATGGTGTCAGAGAAGgtaagactgc ... tatcttgtagATTGACGTCTATTCGTTTGGAATTGTCATGTGGGAGCTGCTTACTGGGGAA
EST: GGATGGCACCAGAGCTTTTGAGTGGGAAAAACAATATGGTGTCAGAGAAG ATTGACGTCTATTCGTTTGGAATTGTCATGTGGGAACTGCTTACTGGGGAAEST: gi|83278211|gb|DV942219.1|DV942219
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAACAATATGGTGTCAGAGAAGgtaagactgc ... tatcttgtagATTGACGTCTATTCGTTTGGAATTGTCATGTGGGAGCTGCTTACTGGGGAA
EST: GGATGGCACCAGAGCTTTTGAGTGGGAAAAACAATATGGTGTCAGAGAAG ATTGACGTCTATTCGTTTGGAATTGTCATGTGGGAACTGCTTACTGGGGAA
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAACAATATGGTGTCAGAGAAGgtaagactgc ... tatcttgtagATTGACGTCTATTCGTTTGGAATTGTCATGTGGGAGCTGCTTACTGGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTAAACAGCATACTTTGGTATCTGGTGGTGTTAGAGGAACCTTACCGTGGATGGCACCAGAGCTTCTGAGTGGGAAAAACAATATGGTGTCAGAGAAGgtaagactgctttgccttgtcactacaattattagaccatattaaaacaatgccccacttttttgcgttctatcacagactatttttatgtatcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT