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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAAAATTTCAGTAAATCAAGGGACTGCTACACTATTGCCAGTTGAAGGAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATTgtaagtccatcggctattcggcttcatttagatcattaaattttgtgcatatgctttctcaaaattacttatgtgattcatgtattactgttatcgtcatctttatgcattattttcaactgcaagaattatatttatctatcttatcctcatatccag

Basic information

species Zea mays
transcript GRMZM2G038667_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038667_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 5'ss of exon 3
TTCAAAAATTTCAGT-AAATCAAGGGACTGCTACACTATTGCCAGTTGAAGGAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATTgtaagtccatcggctattcggcttcatttagatcattaaattttgtgcatatgctttctcaaaattacttatgtgattcatgtattactgttatcgtcatctttatgcattattttcaactgcaagaattatatttatctatcttatcctcatatccag
 ||  || |   ||| || ||| |||| ||||    |||||||  |||||||||| |||||||||||||| |||||| ||||||| || | | | ||||| |||||||  |          |  |||      || | | | |   | |||       |||||  ||   | | || ||  || |    ||    |  || | | |  || |  | |                                           
-TCCTAATTCAAAGTTAACTCATGGGAGTGCTGTGATATTGCCTATTGAAGGAAATTATTCTCGAGGAAACTTGATGTTTCAGAGGATCAGGTCCTACATAgtaagtctgt----------gtctcaacgttctcttcatactacctacat-----ccctcaatgtttgatgt-tggttagtgcaaatttgcacacaccaacatcaaacaatcctat-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481641|gb|EY254473.1|EY254473
EST:     GAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATT                         GCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAAT
genomic: GAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATTgtaagtccat ... tcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAAT