1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgcttgctagttgtggcttataatatgtgcagccggtgctggtcgatgggctcagcatgtcgtctcccaattcctgaaacgaaaacgttatgaaaacttgcag
species | Zea mays |
transcript | GRMZM2G038598_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|71440043|gb|DR821093.1|DR821093
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTTTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|148951201|gb|EC896889.2|EC896889
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTTTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|31250360|gb|CD219384.1|CD219384
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAAGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|74240923|gb|DT648837.1|DT648837
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|91053192|gb|EB163610.1|EB163610
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|211169445|gb|FL037896.1|FL037896
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|74237589|gb|DT645503.1|DT645503
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|78085824|gb|DV514217.1|DV514217
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTTTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|149087171|gb|EE176707.2|EE176707
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTTTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|211169444|gb|FL037895.1|FL037895
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|211091121|gb|FL440769.1|FL440769
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|71429156|gb|DR810206.1|DR810206
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|62525910|gb|DN828558.1|DN828558
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAAGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|116828756|gb|EC860854.1|EC860854
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAAGAGCTCAAATGGAA GTCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|50335983|gb|CO531109.1|CO531109
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTTTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|18163517|gb|BM333356.1|BM333356
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|78121122|gb|DV539506.1|DV539506
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: GAGATCGTTTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAGEST: gi|18163490|gb|BM333329.1|BM333329
genomic: GAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
EST: CTGCCAAGGCAGAGAAGGAGCTCAAATGGAA GGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
genomic: CTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgc ... aaacttgcagGGCCAAGTACGGGATCGAGGAGATGTGCAGAGATCTGTGGAACTGGGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCTACGCCGCAACTGCCAAGGCAGAGAAGGAGCTCAAATGGAAgtaagtatgcttgctagttgtggcttataatatgtgcagccggtgctggtcgatgggctcagcatgtcgtctcccaattcctgaaacgaaaacgttatgaaaacttgcag
- - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA