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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggttactgtatcttgttttcagaagtgcgcctacttgttttgtttaccctgtctgaatta...

Basic information

species Zea mays
transcript GRMZM2G038487_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 5
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggttactgtatcttgttttcagaagtgcgcctacttgttttgtttaccctgtctgaatta-------------------------------------------
|| || || ||||| ||||||  |||||||||||||||||| |||||||| || |||||||| ||||| || ||||| || ||||| ||||||||||||||||||      || |  | |  |          ||||    | | | | || |   |||| |||||   |  |      ||    | |       | ||                                            
GATGGGAGACCTGGATGTGTTATGAACACATGTGCTCACAGAGCTTGCCCTCTTCATCTTGGCTCAGTTAATGAGGGCAGAATCCAATGCCCTTACCATGgtaagaaaag-acagctttacatgaactttcatttctgcatgcttccgcattta--tttctgaagtcttcagatgaaaatttgccaacagagagaagttgcgaaagtagtatttcagtttttttttgttttcataaccttcag

upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 5
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcct-actgtctgaattaggtcagagattctcggggt--tactgtatcttgttttcagaagtgcgcctacttgttttgtttaccctgtctgaatta
|| || || ||||| |||||||||||||||||||||||||| || ||||| || |||||||| ||||| |  |||||||| ||||| ||||||| ||||||||||       |   | |  || |  |   |  ||  |  | |  | |||| | ||    || ||  | |      |    | |   ||  || ||  || |
GATGGGAGACCTGGATGTGTTCAGAACACATGTGCTCACAGAGCCTGCCCTCTTCATCTTGGCTCAGTTAGTGAGGGTAGAATCCAATGCCCTTTCCATGgtaagaaaaaagaaactttatatgaaatttcattttggcacgcttctgctgt-ttttacaatctgattttcaaagcatcagctagc--actatggctatatga

upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G03430.1 (Glycine max), 5'ss of exon 5
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctac--------------tgtctgaat--taggtcaga---gattctcggggttactgtatct-tgttttcagaa-gtgcgcctacttgttttgtttaccctgt--ctgaatta-----------------------------
|| || | |||||| ||||| |||||||| ||||| || || || ||||| ||||| ||||||||||| || |||||| | ||||| || || ||||||||| |||   |  |              | ||| |    |  || | |    ||| | |  | || ||||  | |  ||||| |     |  |     | ||| | ||| |||    |||  ||                             
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatgattatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagatttatgtacactgaaattgacatactctaaaatttcaaatggttggatatcag

upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G23860.2 (Glycine max), 5'ss of exon 5
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggtt--actgtat-cttgttttcagaagtgcgcctacttgttttgtttaccctgtc-tgaatta----------------------------------------------------------
|| || | |||||| ||||| |||||||| ||||| ||| | || || || ||||| ||||||||||| ||||||||| | ||||| || || ||||||||| |||     | |  |||||  |  | |     ||   |   |  | | ||| |   | || | |  ||    |   ||| |  |||  | || | |    ||                                                          
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTCTGCACCTTGGTTCAGTAAACGAGGGTCGTATCCAATGTCCCTACCATGgttagt-----agtcactgaaacaaatgattatgtcctagcaatgaattatatgcacttcttgatacttgataatgtatgtgtaatttcacatgacatagcctacagatttatgtacactggaattgacgtactctaaaatttcaaaatggttggatatcag

upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G11920.1 (Glycine max), 5'ss of exon 5
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggttactgtatcttgttttcagaagtgcgcctact-tgttttgtttaccctgtctgaatta---------------------------------------------------------------------------------------
|| || | |||||| |||||||| || || || || ||||| || ||||| ||||| |||||||| ||||| |||||| | ||||| || |||||||||||| |||   | | ||  |||  |   ||  |    |||    |||  | || || |  ||  |     |    |  ||  || | | | |||   ||   |                                                                                       
GATGGGAAGCCTGGATGTGTTCAAAATACCTGCGCACACAGAGCATGCCCTCTGCACCTTGGTTCTGTGAAGGAGGGTCGTATCCAATGTCCTTACCATGgttagtagtc-agtgaatga--tgactcttaa---ctccaacttatggaattttctgctccaatacatgatagcaatgagttatatgcactggtagatacacatacatgaaaatatatcctagcaatgagttatatgctatacgcattaaaacatacaggttaaaaatatctaatggttggatgttag

upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggttactgtatcttgttttcagaagtgcg-cctact--tgttttgtttaccctgtctgaatta
|| || | ||||||||||||||||||||| ||||| ||||| || || || || || |||||||| ||||| |||||| | ||||| ||||||||||||||| |||                    | | |    ||   ||  | | |  |||   | ||  | |    ||||    ||  || | | | |||  | |    
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatgatgactctttacaccaacttaaggaaatttttgcttcaatacatgattatatcctagcaatgagttatatgcactggttcat---

upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggttactg-----------tatcttgttt-tcagaagtgcgcctacttgt-----tttgtttaccc-tgtctgaatta--------------------
|| || |  ||||| ||||| |  ||||| || || || || || ||||| || |||||||| ||||| ||||||||| | ||||| || |||||||||||| |||            ||| || |  | || ||  | |  || ||            |  |   |   | || | |||    | |        ||||||| | | |||   ||||                     
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaag-gaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag