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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCTCAATGGTTGCTATGGCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTTgtgagttcgattattactctatttcattgcagctcaacaatgtttattcacttaactttttttcag

Basic information

species Zea mays
transcript GRMZM2G037923_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 5'ss of exon 5
CACTCTCAATGGTTGCTATGGCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTTgtgagt---------tcgattattactctat--ttcattgcagctcaaca-atgtttattca--cttaactt---tttttcag
 | ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||||         |  || |  | |||||  | |  || ||||||||  || || | | |  ||||| |    |||| |||
TAATCTTAATGGCTGCTATGGCATACCAGCTGTCCACTACAAGGGTCGTCAGGGCGACTACTATATTCTTgtgagtttactgaagttaataaccattctatgctgccatggagctcaacgtatcttgacttaatcttaattaaaattttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928688|gb|CF033500.1|CF033500
EST:     GCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTT                         GTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGG
genomic: GCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTTgtgagttcga ... tttttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGG
EST: gi|32929679|gb|CF034491.1|CF034491
EST:     GCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTT                         GTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGG
genomic: GCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTTgtgagttcga ... tttttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGG