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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacattcacttatttatatctctgtatcctgtctaattatatattacaatttgcttggaacattttatcaatgtttaattttatagcatagctgaa...

Basic information

species Zea mays
transcript GRMZM2G037698_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037698_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 3
GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacattcacttatttata-tctctgtatcctgtctaattatat--attacaa--tttgcttggaacattttatcaatgtttaattttatagcatagctgaa
|||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| || || ||||| |  | || || |||  | | | ||| |  | | |   || || |  | |||||  | | |      | ||| |  ||   | ||| ||||   |||| |   
GAGTGGGATGCTATCATGCTTTCTAGTTTTGCTTTGGAGCAGCAGCTTCATACAGCAAGACAAGAACTTAGTCATGCGCTATATCAGgtatgtcttttacctatgcagaatttctattacatattgtatcatgttaagtacaaaatcttcccttttcttttgacaaactatgaatgttat--tatagtt---

upper sequence: GRMZM2G037698_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 5
GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttac--attcacttatttatatctctgtatcctgtctaattatatattacaatttgcttggaacattttatcaatgtttaattttatagcatagctgaa----
|| |||||||   | ||||| ||||||||||| |||||||| ||  | |||||||||||||| || || |||||||| || || |||||   |   |   | ||||| || |          |||||  |||||  |     | ||||| | |   |||  ||    || | |||  |  ||  |  ||    
GAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGACAGGAGCTGAGTCATGCTCTGTATCAGgtaagagcaacaaagttattaatgtaaaaaatcattgtctt-ttatagttctgcttctgctttgca---tttcccagcccttgagtttgca--atctccaaaactt

upper sequence: GRMZM2G037698_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 5
GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttac--attcacttatttatatctctgtatcctgtctaattatatattacaatttgcttggaacattttatcaatgtttaattttatagcatagctgaa----
|| |||||||   | ||||| ||||||||||| |||||||| ||  | ||||||||||||||||| || ||||||||  | || |||||   |   |   | ||||| || |       |  |||||   | |||| | |   ||  |    ||||||  |||    ||   |||  |  ||  |  ||    
GAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGACAAGAGCTGAGTCATGCTTTGTATCAGgtaagagcaacaaagttattaatgtaaaaaattgttgtct---tttatagttctgcttcttctttacatttc-tcagcccttgtgtttgca--atctccaaaactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26457390|gb|CA828973.1|CA828973
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|149082488|gb|EE171681.2|EE171681
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211398014|gb|FL052437.1|FL052437
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211395393|gb|FL052425.1|FL052425
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAAGAA-GAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|31350321|gb|CD434678.1|CD434678
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211398013|gb|FL052436.1|FL052436
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211124460|gb|FL005599.1|FL005599
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211504415|gb|FL052464.1|FL052464
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTATTATAGCCAGGTTGAAGAAGGAAAGAGATGAA
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGA-
EST: gi|211390140|gb|FL052400.1|FL052400
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCGTGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211395402|gb|FL052434.1|FL052434
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211398015|gb|FL052438.1|FL052438
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211392766|gb|FL052411.1|FL052411
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|148956938|gb|EC902874.2|EC902874
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|148987120|gb|EE030948.2|EE030948
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|60397274|gb|DN230090.1|DN230090
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211504427|gb|FL052476.1|FL052476
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211395398|gb|FL052430.1|FL052430
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211504417|gb|FL052466.1|FL052466
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211502064|gb|FL052452.1|FL052452
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGGAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211398012|gb|FL052435.1|FL052435
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTT
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTT
EST: gi|211392768|gb|FL052413.1|FL052413
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGGCGTGTTATAGCCNAGGT-GAAGAAGGAA-GAGATGA
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCC-AGGTTGAAGAAGGAAAGAGATGA
EST: gi|211125228|gb|FL005601.1|FL005601
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|148940045|gb|EC884788.2|EC884788
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211125241|gb|FL005614.1|FL005614
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211502068|gb|FL052456.1|FL052456
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211502063|gb|FL052451.1|FL052451
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTATTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211506781|gb|FL052484.1|FL052484
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGGAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211395391|gb|FL052423.1|FL052423
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211392761|gb|FL052406.1|FL052406
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTG
EST: gi|211504424|gb|FL052473.1|FL052473
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTATTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211395395|gb|FL052427.1|FL052427
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAANGAAAGAGATGAN
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211392774|gb|FL052419.1|FL052419
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211398022|gb|FL052445.1|FL052445
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211502073|gb|FL052461.1|FL052461
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGGCTGCCGTGTTATAGCCAGGTTGAAAAAG-AAAGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAG
EST: gi|26456415|gb|CA827998.1|CA827998
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGCTATAGCCAGGCTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211502067|gb|FL052455.1|FL052455
EST:     GCAGCAGCTACACACAGCAAGAACA-GAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGCTGAAGACG-AAAGAGATGA
genomic: GCAGCAGCTACACACAGCAAGA-CAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGA
EST: gi|211506778|gb|FL052481.1|FL052481
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTATTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|31354887|gb|CD439244.1|CD439244
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211125235|gb|FL005608.1|FL005608
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|149095787|gb|EE181433.2|EE181433
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|148958621|gb|EC904872.2|EC904872
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
EST: gi|211502065|gb|FL052453.1|FL052453
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCT
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCT
EST: gi|211504418|gb|FL052467.1|FL052467
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTNGCCTGGCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGA
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCT-GCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGA
EST: gi|211398020|gb|FL052443.1|FL052443
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACNGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGA
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGAC-GCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGA
EST: gi|211392773|gb|FL052418.1|FL052418
EST:     AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAG                         CATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG
genomic: AGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 355

GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAGGCTAGAGCACTTTTGGCTCAAGCTGAGAGACAGATTCCAGCATCAGTTG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 146

GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAGGCTAGAGCACTTTTGGCTCAAGCTGAGAGACAGATTCCAGCATCAGTTG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 140

GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAGGCTAGAGCACTTTTGGCTCAAGCTGAGAGACAGATTCCAGCATCAGTTG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 144

GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacatt ... tccctttcagCATGACGCTGCCTGCCGTGTTATAGCCAGGTTGAAGAAGGAAAGAGATGAGGCTAGAGCACTTTTGGCTCAAGCTGAGAGACAGATTCCAGCATCAGTTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGTGGGATGCTCTCATGCTTTCTAATTTTGCTTTGGAGCAGCAGCTACACACAGCAAGACAAGAACTTAGTCATGCACTCTACCAGgtcttacattcacttatttatatctctgtatcctgtctaattatatattacaatttgcttggaacattttatcaatgtttaattttatagcatagctgaa

- - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC