1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGTGACCATATCCTCCCCTGAGAACAGTCTCAACACTGACGGAATACACCTGCAGAACTCCAAAGATGTCAGCATTCATCATACAACCCTGGCTTGTGgtaattcctcaatccttactgtatatctcaattcaagagggatctaggctgtattcatgaaactcaaaagttttgttttgcaaagctttacaacaaagac...
species | Zea mays |
transcript | GRMZM2G037431_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTGCAGAACTCCAAAGATGTCAGCATTCATCATACAACCCTGGCTTGTG GTGATGATTGCATCTCCATCCAGACAGGATGCAGCAACATAAATATACACAEST: gi|91872777|gb|EB402734.1|EB402734
genomic: CCTGCAGAACTCCAAAGATGTCAGCATTCATCATACAACCCTGGCTTGTGgtaattcctc ... ttcgatgcagGTGATGATTGCATCTCCATCCAGACAGGATGCAGCAACATAAATATACACA
EST: CCTGCAGAACTCCAAAGATGTCAGCATTCATCATACAACCCTGGCTTGTG GTGATGATTGCATCTCCATCCAGACAGGATGCAGCAACATAAATATACACAEST: gi|71772110|gb|DR970047.1|DR970047
genomic: CCTGCAGAACTCCAAAGATGTCAGCATTCATCATACAACCCTGGCTTGTGgtaattcctc ... ttcgatgcagGTGATGATTGCATCTCCATCCAGACAGGATGCAGCAACATAAATATACACA
EST: AAGATGTCAGCATTCATCATACAACCCTGGCTTGTG GTGATGATTGCATCTCCATCCAGACAGGATGCAGCAACATAAATATACACA
genomic: AAGATGTCAGCATTCATCATACAACCCTGGCTTGTGgtaattcctc ... ttcgatgcagGTGATGATTGCATCTCCATCCAGACAGGATGCAGCAACATAAATATACACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGACCATATCCTCCCCTGAGAACAGTCTCAACACTGACGGAATACACCTGCAGAACTCCAAAGATGTCAGCATTCATCATACAACCCTGGCTTGTGgtaattcctcaatccttactgtatatctcaattcaagagggatctaggctgtattcatgaaactcaaaagttttgttttgcaaagctttacaacaaagac
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaacaaa