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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCCAGCTGCTTCTCTAGATGGCCATAAGCTTGCTGTTGTTTCATTGATAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaagcttgttcacccacactcatgctcagtcttaagatagattcaatatatgaagaagtatatgctgtgtcatgagattttaagttcttgttga...

Basic information

species Zea mays
transcript GRMZM2G037200_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037200_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g45480.3 (Oryza sativa), 5'ss of exon 3
TGAGCCAGCTGCTTCTCTAGATGGCCATAAGCTTGCTGTTGTTTCATTGATAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaagctt----------gttcacccacactcatgctcagtcttaagatagattcaatatatgaagaagtatatgctgtgt-catgagattttaagttcttgttga
||| |||||||| ||||| | ||| ||  |||||||||| ||||||||  ||||||||| |||||||||||| |||||||||||||| ||||| || |||||| | | | |||          |||||| |  | ||||| | | |||||| | |||| || |   ||  | |   | || ||  |  || |  ||               
TGAACCAGCTGCCTCTCTTGTTGGGCACCAGCTTGCTGTCGTTTCATTAGTAGTAGGAGCCATGAGGCTTTACTCTGCTTCAATGGACAAAACAATTAGAgtaaggagaacttttgactcttggttcacacctattcatgtttactcttaa-acagatacacttgctgttggaagctctgttgcatatataaacttcccca----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31997696|gb|CD661719.1|CD661719
EST:     TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGA                         GTATGGGGATTTGGC
genomic: TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaag ... tgaatttcagGTATGGG-ATTTGGC
EST: gi|95107946|gb|EB740175.1|EB740175
EST:     TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGA                         GTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACC
genomic: TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaag ... tgaatttcagGTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACC
EST: gi|87157418|gb|DY402207.1|DY402207
EST:     TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGA                         GTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACC
genomic: TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaag ... tgaatttcagGTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACC