1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaattttttttctctatgccacttgaagggcctcagtttttttttaaataaaaaaataacactgaactgtcttggacacatgaagtattaccgaatg...
species | Zea mays |
transcript | GRMZM2G036861_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGCCAGAGAAACCGTTTNAAGGGTGGCTGCAGGGEST: gi|148952455|gb|EC898280.2|EC898280
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAG-TCGTCGEST: gi|148961384|gb|EE012122.2|EE012122
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|71442820|gb|DR823870.1|DR823870
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|148995329|gb|EE034551.2|EE034551
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|149036977|gb|EE155215.2|EE155215
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|149084565|gb|EE174034.2|EE174034
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|149078720|gb|EE167520.2|EE167520
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|148957149|gb|EC903140.2|EC903140
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|211106349|gb|FL258158.1|FL258158
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAAGTGGGGAGGTCGTCNGGCAGAGAA-CCGTTTGGAAGGEST: gi|211106350|gb|FL258159.1|FL258159
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGG-AGGTCGTCGGGCAGAGAAACCGTT-GGAAGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAAAGAAACCGTTGGAEST: gi|71768469|gb|DR966406.1|DR966406
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGA
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|148947516|gb|EC892976.2|EC892976
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|78109644|gb|DV528060.1|DV528060
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGEST: gi|76281790|gb|DV021358.1|DV021358
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
EST: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAG GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
genomic: CTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaatttt ... attttgacagGGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACTTATGACTTCAAGTACGGTGTTAGAGCTGTACAGgtagaattttttttctctatgccacttgaagggcctcagtttttttttaaataaaaaaataacactgaactgtcttggacacatgaagtattaccgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaat