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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGGATCTTTCGTGCGGCCAGCTGTTCTGATAACTGATGCTTACAATGCTTTGAACAACCAAGGCTATAGAAAAAAGCAGGATCAAGATTTCATTGgtacattacttggcactgtatctgcttttattattctgtttctttagacttttgcagtttaagcagtattcctaagttctagcatctgagttttgtcatc...

Basic information

species Zea mays
transcript GRMZM2G036050_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036050_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g39590.1 (Oryza sativa), 5'ss of exon 5
GTTCTTGGATCTTTCGTGCGGCCAGCTGTTCTGATAACTGATGCTTACAATGCTTTGAACAACCAAGGCTATAGAAAAAAGCAGGATCAAGATTTCATTGgtacattacttggcactgtatc----tgcttttattattctgtttcttt---agacttttgcagtttaagcagtattcctaagttctagcatctgagttttgtcatc
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GCTCTTGGATCATTTGTACGGCCAGCTGTTCTGATAACTGATGCATACAATGCCTTGAACAACCATGTCTACAAAAGGCAGCAGGATCAAGATTTCATTGgtacaacactggacatgttattatcatagctctctatctctatctctttttcaaatgctttcagctctagcattactactatacccacacagccatggtt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361140|gb|CD445497.1|CD445497
EST:     TGCTTTGAACAACCAAGGCTATAGAAAAAAGCAGGATCAAGATTTCATTG                         ACTCATTAATTAAAGTTCTGGCAACTGGTGGAAGTGTGCTACTTCCTGTTG
genomic: TGCTTTGAACAACCAAGGCTATAGAAAAAAGCAGGATCAAGATTTCATTGgtacattact ... tttcatgcagAATCATTAATTAAAGTTCTGGCAACTGGTGGAAGTGTGCTACTTCCTGTTG