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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAAGGGTAGTGGAGCACCGCTTCCTACCAAGGAAATTGCTGCAATGCTTCCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAGgtttgttacctttgagtgaaccatatctaaattttaggttctttctaaaattattaacatatttgtacctttag

Basic information

species Zea mays
transcript GRMZM2G035338_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035338_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g40880.1 (Oryza sativa), 5'ss of exon 5
-CACAAAGGGTAGTGGAGCACCGCTTCCTACCAAGGAAATTGCTGCAATGCTTCCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAGgtttgttacctttga-gtgaaccatatctaaattttaggtt-ctttctaaaattattaacatatttgtacctttag
 ||| | |  | || |  |||   || | ||| | ||||||||  | |||||||| |||||||||||||||||||||||  |||| || |||||||||||||| ||||  |||  | |  | ||||| || ||| |||  ||  |||||  ||| ||| | ||  ||||   | |||
GCACGA-GAATGGTAGTTCACTTATTTCAACCGAAGAAATTGCCACGATGCTTCCCATGGATGGTTTCCACCTTTATCGGTCCCAACTAGATGCAATGGAGgtctgttctcttctatgcaacccatacctgaatgttatattgttttctctaatcattgatattgttgtcattgtag

upper sequence: GRMZM2G035338_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv07s0141g00310.t01 (Vitis vinifera), 5'ss of exon 5
CACAAAGGGTAGTGGAGCACCGCTTCCTACCAA-GGAAATTGCTGCAATGCTTCCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAGgtttgttacctttgag---tgaaccatatctaaattttagg---ttctttctaaaatt--att----aacatatttgtacctttag--------------
 |        | | ||    |   |    ||    ||  |||||||| | ||||| |||||||| ||||| |||||||||   ||||| ||||||||||||||| |    |    |    |  ||  ||| |  |||||  |   ||||  ||  | ||  |||    | |||   | ||| ||  |              
-AGCTTCATCATTTGATTCTCAAGTTGGGCCTCCAGATGTTGCTGCAGTTCTTCCCATGGATGGGTTCCATCTTTATCGTCATCAGCTGGATGCAATGGAGgttggccttccccaaaatttttactttatttttattttttggttttctaccttgacttccattccaaagcattgctttactttgtgggcatttcctagtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60350250|gb|DN217223.1|DN217223
EST:     CAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAG                         GATCCAAAAGAAGCACATGCAAGAAGAGGAG
genomic: CAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAGgtttgttacc ... gtacctttagGATCCAAAAGAAGCACATGCAAGAAGAGGAG
EST: gi|78179609|gb|DV549982.1|DV549982
EST:     CCAGCTTGATGCAATGGAG                         GATCCAAAAGAAGCACATGCAAGAAGAGGAG
genomic: CCAGCTTGATGCAATGGAGgtttgttacc ... gtacctttagGATCCAAAAGAAGCACATGCAAGAAGAGGAG
EST: gi|88751321|gb|DY535462.1|DY535462
EST:     TTCCAATGGATGG-TTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAG                         GATCCAAAAGAAGCACATGCAAGAAGAGGAG
genomic: TTCCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAGgtttgttacc ... gtacctttagGATCCAAAAGAAGCACATGCAAGAAGAGGAG
EST: gi|6952677|gb|AW424745.1|AW424745
EST:     TTCCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAG                         GATCCAAAAGAAGCACATGCAAGAAGAGGAG
genomic: TTCCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAGgtttgttacc ... gtacctttagGATCCAAAAGAAGCACATGCAAGAAGAGGAG
EST: gi|149082265|gb|EE171450.2|EE171450
EST:     TTCCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAG                         GATCCAAAAGAAGCACATGCAAGAAGAGGAG
genomic: TTCCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAGgtttgttacc ... gtacctttagGATCCAAAAGAAGCACATGCAAGAAGAGGAG
EST: gi|94472538|gb|EB701496.1|EB701496
EST:     CCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAG                         GATCCAAAAGAAGCACATGCAAGAAGAGGAG
genomic: CCAATGGATGGTTTCCACCTTTATCGTGCCCAGCTTGATGCAATGGAGgtttgttacc ... gtacctttagGATCCAAAAGAAGCACATGCAAGAAGAGGAG
EST: gi|71766668|gb|DR964605.1|DR964605
EST:     CGTGCCCAGCTTGATGCAATGGAG                         GATCCAAAAGAAGCCCATGCAAGAAGAGGAG
genomic: CGTGCCCAGCTTGATGCAATGGAGgtttgttacc ... gtacctttagGATCCAAAAGAAGCACATGCAAGAAGAGGAG
EST: gi|86470370|gb|DY236740.1|DY236740
EST:     CCAGCTTGATGCAATGGAG                         GATCCAAAAGAAGCACATGCAAGAAGAGGAG
genomic: CCAGCTTGATGCAATGGAGgtttgttacc ... gtacctttagGATCCAAAAGAAGCACATGCAAGAAGAGGAG