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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaaaggatccatcatttttttccattttgcctgaagccatctcacagcatctatttgtattctgtggtctcttaaacag

Basic information

species Zea mays
transcript GRMZM2G035150_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74235678|gb|DT643592.1|DT643592
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|78092883|gb|DV521257.1|DV521257
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|71427954|gb|DR809004.1|DR809004
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGGTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|76289426|gb|DV028994.1|DV028994
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|71427953|gb|DR809003.1|DR809003
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|74235679|gb|DT643593.1|DT643593
EST:     GGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGGCA-CTGCCAG                         TTTCGAGCGCTGT
genomic: GGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGG-CAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGT
EST: gi|86466720|gb|DY233090.1|DY233090
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|71427180|gb|DR808230.1|DR808230
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|78080763|gb|DV509175.1|DV509175
EST:     CTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: CTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|76291810|gb|DV031378.1|DV031378
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: gi|50327716|gb|CO522842.1|CO522842
EST:     TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG                         TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaaaggatccatcatttttttccattttgcctgaagccatctcacagcatctatttgtattctgtggtctcttaaacag

- - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - GAGATG