1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaaaggatccatcatttttttccattttgcctgaagccatctcacagcatctatttgtattctgtggtctcttaaacag
species | Zea mays |
transcript | GRMZM2G035150_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGTGTACGGTTTGGTTGATCTCAAGGGTAAAGGAGATGGCAACTGCCAG TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTTEST: gi|88748647|gb|DY532788.1|DY532788
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTTEST: gi|74235679|gb|DT643593.1|DT643593
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: GGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGGCA-CTGCCAG TTTCGAGCGCTGTEST: gi|71763432|gb|DR961369.1|DR961369
genomic: GGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGG-CAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGT
EST: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTTEST: gi|76291810|gb|DV031378.1|DV031378
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
EST: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAG TTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
genomic: TGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaa ... tcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGCCAGgtttgtgtaaaggatccatcatttttttccattttgcctgaagccatctcacagcatctatttgtattctgtggtctcttaaacag
- - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - GAGATG