Sequence
atgc intronic sequence ATGC exonic sequenceGCTACTTCTCTCTTGTATGCAAAACTTGAAACATGGCAAAGCTGTCGACATCCCTAATTACAACTTCAAGACATACAAGAGTGTACCAAATGCAAGGAAGgtaatattttaagtttagtgcaattcttaataatcaacctgactggtaaactgatcggcctttatgagcctctgaatacaacattacattttcaaaaagaatatctgcacattgtcctgaataagttatattgttttgtatggtcccaataataacctgctccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 5
GCTACTTCTCTCTTGTATGCAAAACTTGAAACATGGCAAAGCTGTCGACATCCCTAATTACAACTTCAAGACATACAAGAGTGTACCAAATGCAAGGAAGgtaatattttaagtttagtgcaattcttaataatcaacctgactggtaaactgatcggcctttatgagcctctgaatacaacattacattttcaaaaagaatatctgcacattgtcctgaataagttatattgttttgtatggtcccaataataacctgctccag
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GTTACTACTCTCTTGTATGGAGAACTTGAAACATGGCAAGGCTGTGGACATTCCTAATTACAACTTCAAAACATATAAGAGTGTTGCAAGTGCAAGAAAGgtactactattt-tacagtgctatc----ataatttactcacctggtaaactga--aggtttcctcgtcctgagtttctaa---taaagccttaagattctaatctatgc-------------------------------------------------------
upper sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 5
GCTACTTCTCTCTTGTATGCAAAACTTGAAACATGGCAAAGCTGTCGACATCCCTAATTACAACTTCAAGACATACAAGAGTGTACCAAATGCAAGGAAGgtaatattttaagtttagtgcaattcttaa-taatcaacctgactggtaaactgatcggcctttatgagcctctgaatacaacattacattttcaaaaagaatatctgcacattgtcctgaataagttatattgttttgtatggtcccaataataacctgctccag
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GTTACTACTCTCTTGTATGGAGAACTTGAAACATGGCAAGGCTGTGGACATTCCTAATTATAACTTCAAAACATATAAGAGTGTAGCAAGCGCAAGAAAGgtactactcttt-tacactgctgttcataacttactcacctgataaactgaatgtttcctcgtcctgagcttct-aatacagccttaagtttctaatctatg----------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60344955|gb|DN211928.1|DN211928EST: TCCCTAATTACAACTTCAAGACATACAAGAGTGTACCAAATGCAAGGAAG ANNNNNNNNGTGAAAAACTACAATTTATG
genomic: TCCCTAATTACAACTTCAAGACATACAAGAGTGTACCAAATGCAAGGAAGgtaatatttt ... cctgctccagATTTTTTTTGTGAAAAACTACAATTTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTACTTCTCTCTTGTATGCAAAACTTGAAACATGGCAAAGCTGTCGACATCCCTAATTACAACTTCAAGACATACAAGAGTGTACCAAATGCAAGGAAGgtaatattttaagtttagtgcaattcttaataatcaacctgactggtaaactgatcggcctttatgagcctctgaatacaacattacattttcaaaaagaatatctgcacattgtcctgaataagttatattgttttgtatggtcccaataataacctgctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA