1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGAACCGTATCCTCTGGATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattcatgctttcgatgtacctcacagatctcagttgcctccatattaattgtaccagccatttttatgtgaaagggagacgtttttctactatattgtcaatcataacagccattattttcatgtacag
species | Zea mays |
transcript | GRMZM2G034083_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|67023264|gb|CO452013.1|CO452013
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GAGAGGTGAACTAGATGACACAGCTGCTTTCACAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|31357444|gb|CD441801.1|CD441801
genomic: GAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|13150055|gb|BG320377.1|BG320377
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|148986293|gb|EE030028.2|EE030028
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: ATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTNCA-TAA GTGGGGCAATATTGEST: gi|211020101|gb|FL063974.1|FL063974
genomic: ATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTT-CAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTG
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|18964714|gb|BM661164.1|BM661164
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: TTCAAAAACTTCAAT-A GTGGGGCAATA-TGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|60353107|gb|DN220080.1|DN220080
genomic: TTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAACATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|18964715|gb|BM661165.1|BM661165
genomic: GACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACNCAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|22490798|gb|BU050721.1|BU050721
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|67025367|gb|CO454116.1|CO454116
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: CTAGATGACTCCCCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|7238111|gb|AW573333.1|AW573333
genomic: CTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAACATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|44901489|gb|CK828034.1|CK828034
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: AGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAACA-TGTTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTEST: gi|31356652|gb|CD441009.1|CD441009
genomic: AGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTG-TGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCT
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|19058295|gb|BM736962.1|BM736962
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAACCTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|78103680|gb|DV522108.1|DV522108
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: ATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|31353311|gb|CD437668.1|CD437668
genomic: ATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|13150060|gb|BG320382.1|BG320382
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|31355046|gb|CD439403.1|CD439403
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTEST: gi|31354936|gb|CD439293.1|CD439293
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATT
EST: GATCTTAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTTCCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|19057819|gb|BM736486.1|BM736486
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: CTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|87151765|gb|DY396554.1|DY396554
genomic: CTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|67042517|gb|CO468772.1|CO468772
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAACATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|32859101|gb|CD998782.1|CD998782
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|148955951|gb|EC901669.2|EC901669
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAA-CTTCAATAA GTGGGGCAATATTEST: gi|33104123|gb|CF064083.1|CF064083
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATT
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|37401585|gb|CF638160.1|CF638160
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAACATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCEST: gi|67016541|gb|CO445290.1|CO445290
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
EST: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAA GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
genomic: GATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattca ... tcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTGAGATGAACCCATTCACCTTGGTAAATGGTGAACCGTATCCTCTGGATATGAGAGGAGAACTAGATGACACAGCTGCTTTCAAAAACTTCAATAAgtatgattcatgctttcgatgtacctcacagatctcagttgcctccatattaattgtaccagccatttttatgtgaaagggagacgtttttctactatattgtcaatcataacagccattattttcatgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT