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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc...

Basic information

species Zea mays
transcript GRMZM2G032367_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 5'ss of exon 6
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc-
|||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||  |  | |      | | |  | |  |  ||  | |      | | | || | | |         |    |  |||| |||   | | ||    ||  
GCAAGGCACAATGGCCAGAACTATGTGTTTGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGgtaaatctcattctctgtcagttatacc-ttaggcatttgcagttgctacttgctatgtgtatcgcccttaattcctttacaaacaataaagatgctcttg

upper sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G24620.2 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtac-tttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc
||  | ||||||||||||||||||||||| || ||||| ||||| || ||||| |||||||||||||||   |||  ||   || | | |  | ||||  | | |  |  ||     | ||   | |  |||||    | |  |  | |   ||    ||  |  | ||||| 
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCTGGTGTTTCAgtaagttcttttttatctaaagtcttctattttatttagtaaagtaattttataaatttttctaagttgactgatggaaaatgttaggccaccaatacct-

upper sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgta----ctttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc
||  | ||||||||||||||||||||||| || ||||| ||||| || ||||| |||||||||||||||  ||||    |||   |  | | || | ||||  | | |  |  ||     | ||   |    ||| | |  | |  |  | |   ||    ||  |  | ||    
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata----

upper sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttacttgtgtatttattcttgcaatc-tggtgtgttttacagt--tccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc
||  | |||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||||||||  ||||  ||  |||| |||| |   ||  |||  |  ||  | || | ||      ||    ||   |   |||  | || | | | ||| | ||| | ||| | 
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattg-ttgtctattaacatttttaattattatgcttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctag-actacgt-

upper sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT3G27240.1 (Arabidopsis thaliana), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc
||| | ||||||||||  |||||||| || || ||||| ||||| ||||||||||| ||||||||  |   ||||  || ||    | ||     ||| | |        | ||  | |||    | ||  | | | |   |     | | |||| ||   ||         
GCACGTCACAATGGTCCAAACTATGTCTTTGCGCTTCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGgtaagtttctctcattttccacattgaact--------tcttcgaattc---aaagtgctggttatgaaaaatccgatgataactgtacag---------

upper sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgta-------ctttacttgtg-tatttattcttgcaatctggtgtgttttacag-ttccgtgatgttttcg----ctctagtattgttgtttataaatggttaggagtacctc
||  | ||||||||||| |||||||| || || || || ||||| ||||||||||||||||||||  ||  ||||       ||| |||  || ||||  || |     |    | |||   ||||  | | | || || |      || ||  ||      || |  ||  |            
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagacttcataattttcttataaactttaacatcacgactt-tgtatttt------------

upper sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv09s0002g05950.t01 (Vitis vinifera), 5'ss of exon 4
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttacttgtgtatttattcttgcaatctggtgtgttttacagttccgtgatgttttcgctctagtattgttgtt-tataaatggttaggagtacctc-
||  | |||||||||||||| ||||| || |||||| | ||||| ||||||||||| || |||||||||   |||  ||  || | |     |   |  || |   |||  |  |   | ||  | |  |        ||| |   ||   |||     |||| | |    |  
GCCCGCCACAATGGTCAGAATTATGTATTTGCTCTTTTAACTGGTTACCGTGATCCTCCAGCTGGTGTTTCAgtaagttctttatctcagattatatataaac--atgtaatagaacatacctaggtactgaaatctgagtttatctgccatattttcagttatgtgatgatgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71331562|gb|DR802627.1|DR802627
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|60347964|gb|DN214937.1|DN214937
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|30705061|gb|CD058656.1|CD058656
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|50338206|gb|CO533332.1|CO533332
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|14245130|gb|BG873712.1|BG873712
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|149089338|gb|EE178570.2|EE178570
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|76290228|gb|DV029796.1|DV029796
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|76016444|gb|DT943614.1|DT943614
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|71757789|gb|DR955726.1|DR955726
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|78108501|gb|DV526919.1|DV526919
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|74239656|gb|DT647570.1|DT647570
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|78026464|gb|DV494851.1|DV494851
EST:     ATTTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTTGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|37386374|gb|CF630373.1|CF630373
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|101393980|gb|EB818923.1|EB818923
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|29947382|gb|CB816627.1|CB816627
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|91878166|gb|EB408123.1|EB408123
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|211323657|gb|FL286663.1|FL286663
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|14206642|gb|BG840320.1|BG840320
EST:     ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttact ... tgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCC