Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAGCAGCGCGAAGCGAATCAGCCAACAGTGCCCTCGACTATAGGAGATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcctcacttggaacacatttcttgcactgcctcccacattcatgcacagagttggttgatgtctgtgaatgaagagcgcttagaaggagttttcttcttgccgatcacaactacgtcatcaagacatctctcaattggttatccctatgaatctttcag

Basic information

species Zea mays
transcript GRMZM2G031825_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031825_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g21460.1 (Oryza sativa), 5'ss of exon 6
TGAAAAGCAGCGCGAAGCGAATCAGCCAACAGTGCCCTCGACTATAGGAGATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgtt--aatctcctcacttggaacacatttcttgcactgcctcccacattcatgca-cagagttggttgatgtctgtgaatgaagagcgcttagaaggagttttcttcttgccgatcacaactacgtcatcaagacatctctcaattggttatccctatgaatctttcag
| |||||||||| ||||| || || |||||  | || || ||||||||||| || ||||||| ||| || ||||||||||||||||| |||||||||||||||  ||||  || | | |  |||  | |    ||            |   ||   | | |||||   |  ||| ||  |  |  | | ||   || |                                                                       
TCAAAAGCAGCGTGAAGCAAACCAACCAACTATTCCATCAACTATAGGAGAGGAATTTGAGACAAACACCTTCATGCGTGTTGATCTGCCAGAAATACAGgttctaatccacttattagttacatctgttcaacatgatgctatgtttctttgtggctgtgttggaaaa-atctttgcgtccatggaggttgacagcaaga--------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343728|gb|DN210701.1|DN210701
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32846652|gb|CD986333.1|CD986333
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32932226|gb|CF037038.1|CF037038
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32799175|gb|CD951411.1|CD951411
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|33103853|gb|CF063813.1|CF063813
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|84976888|gb|DW475310.1|DW475310
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|101386171|gb|EB815126.1|EB815126
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32857618|gb|CD997299.1|CD997299
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAACTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32930530|gb|CF035342.1|CF035342
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGT
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGT
EST: gi|74233977|gb|DT641891.1|DT641891
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATTTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|60357818|gb|DN224791.1|DN224791
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32930224|gb|CF035036.1|CF035036
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|71773157|gb|DR971070.1|DR971070
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|71430487|gb|DR811537.1|DR811537
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|67033911|gb|CO462660.1|CO462660
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|7138069|gb|AW499414.1|AW499414
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|60345729|gb|DN212702.1|DN212702
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|34391313|gb|CF384541.1|CF384541
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCA
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCA
EST: gi|211460283|gb|FL454155.1|FL454155
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGATAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|50333309|gb|CO528435.1|CO528435
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|211048852|gb|FL416946.1|FL416946
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|76285780|gb|DV025348.1|DV025348
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32800109|gb|CD952345.1|CD952345
EST:     TCGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGTAG
genomic: T-GAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|86466772|gb|DY233142.1|DY233142
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32931268|gb|CF036080.1|CF036080
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|16379654|gb|BI993079.1|BI993079
EST:     TTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: TTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|13515788|gb|BG518064.1|BG518064
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|194716841|gb|FK934000.1|FK934000
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|60346352|gb|DN213325.1|DN213325
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|28982871|gb|BQ538319.2|BQ538319
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32924269|gb|CF029081.1|CF029081
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGA-G
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32931486|gb|CF036298.1|CF036298
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32932414|gb|CF037226.1|CF037226
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|50333308|gb|CO528434.1|CO528434
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32868203|gb|CF007885.1|CF007885
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|71429897|gb|DR810947.1|DR810947
EST:     ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
EST: gi|32826625|gb|CD966303.1|CD966303
EST:     ACGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAG                         GCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG
genomic: ATGAGTTTGAGATAAATACTTTCATGCGTGTTGATCTACCAGAAATACAGgttaatctcc ... aatctttcagGCGAAATTCAGTGTCAACTCTCCAGTTGAAGCAATGAGAGAGGTCAGGAAG