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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCACACAATCTCTTAGAGACTCTCAGAGAACGAATGTTTAAACCTTCTTTGTCAACCATTATCACAGAGAACACAAAgtatgttgtcacttttctttgattcatttatattcttgtgtaattttttttagcaaaagttgatcttgataaaaatgcttatgactgtatttacttgcag

Basic information

species Zea mays
transcript GRMZM2G031609_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 5'ss of exon 5
GTCCACACAATCTCTTAGAGACTCTCAGAGAACGAATGTTTAAACCTTCTTTGTCAACCATTATCACAGAGAACACAAAgtatgttgtcacttttctttgattcatttatattcttgtgtaattttttttagcaaaagttgatcttgataaaaatgcttatgactgtatttacttgcag-----
 ||    || | |  |||| ||||| |||||| | ||| |||||||||| ||||||||||||||| | ||||||||||||||  | |  | |||| || |    |||    || | |  ||| |            |  |||  || ||  | || | ||  |    | | |||   ||     
ATCATTCCAGTGTAATAGAAACTCTAAGAGAAAGGATGCTTAAACCTTCATTGTCAACCATTATCTCGGAGAACACAAAgtacat-gaaatttttattag---tattccatttttgggataaatccacaccatgcca-ctgagttttattcatatccatagtagaccactcactgtgaggatga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76290187|gb|DV029755.1|DV029755
EST:     GAACGAATGTTTAAACCTTCTTTGTCAACCATTATCACAGAGAACACAAA                         AGTAGCAACTGTTTCCCTTTCAGATCCTGTTTGTGTAGCAACCCGGAAAAT
genomic: GAACGAATGTTTAAACCTTCTTTGTCAACCATTATCACAGAGAACACAAAgtatgttgtc ... ttacttgcagAGTAGCAACTGTTTCCCTTTCAGATCCTGTTTGTGTAGCAACCCGGAAAAT