1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAAGATACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctagatggtttttgtttgcttgctcgctggttccatgtgaagaaattattcgtgtagattctctccgtgtccagcgtggccgtttcatctcgtc...
species | Zea mays |
transcript | GRMZM2G031204_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211132103|gb|FL293587.1|FL293587
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACEST: gi|211133032|gb|FL293601.1|FL293601
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACAC
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGEST: gi|166574032|gb|EG273567.1|EG273567
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCG
EST: GCAAAGTATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211133030|gb|FL293599.1|FL293599
genomic: GCAAAG-ATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGCTATTGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211133037|gb|FL293606.1|FL293606
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211240986|gb|FL293644.1|FL293644
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211133028|gb|FL293597.1|FL293597
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|23357637|gb|BU645286.1|BU645286
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211238739|gb|FL293623.1|FL293623
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAEST: gi|211238747|gb|FL293631.1|FL293631
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGA
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGGYCTTCGACACGGAGCTTATCGCCGTCAACGGGEST: gi|211236504|gb|FL293609.1|FL293609
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTA-TTCGACACGGAGCTTATCGCCGTCAACGGG
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCCACGGEST: gi|211240992|gb|FL293650.1|FL293650
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGG
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGEST: gi|108952959|gb|EC364521.1|EC364521
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGG
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATCGCCGTCAACGGGGAAGEST: gi|211238746|gb|FL293630.1|FL293630
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATCGCCGTCAACGGG-AAG
EST: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAG GCGGAGCGACTCTGGTCTTCGACACGGAGCTTATC
genomic: ACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctag ... gatacgatagGCGGAGCGACTCTGGTATTCGACACGGAGCTTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCAAGGATTGCTAGGTATGTGCGTCGGTGAAAAGCGGAAGCTAAAGATACCTGCAAAGATGGGCTATGGCGAGCGAGGCTCCCCACCGAAGATTCCAGgtatggctagatggtttttgtttgcttgctcgctggttccatgtgaagaaattattcgtgtagattctctccgtgtccagcgtggccgtttcatctcgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA