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AATGACTCGGGAAGCTACCGCAGATTATTTTATTTGGCATTGCCTCCATCAGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttactctttctcaatgtcttacttcctcatctctctaagcactgtacccaactgagctttcctgaaattaatgaagctatcctgtaaatacatag...
species | Zea mays |
transcript | GRMZM2G031107_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCAT CTTCACACACTGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGGEST: gi|60672339|gb|DN475101.1|DN475101
genomic: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttact ... gtactttcagCTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGG
EST: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCAT CTTCACACACTGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGGEST: gi|78077422|gb|DV505856.1|DV505856
genomic: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttact ... gtactttcagCTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGG
EST: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCAT CTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGGEST: gi|20301108|gb|BQ164051.1|BQ164051
genomic: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttact ... gtactttcagCTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGG
EST: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCAT CTTCACACACTGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGGEST: gi|33100725|gb|CF060685.1|CF060685
genomic: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttact ... gtactttcagCTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGG
EST: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCAT CTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGGEST: gi|33103231|gb|CF063191.1|CF063191
genomic: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttact ... gtactttcagCTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGG
EST: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCAT CTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGGEST: gi|78119964|gb|DV538348.1|DV538348
genomic: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttact ... gtactttcagCTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGG
EST: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCAT CTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGG
genomic: AGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttact ... gtactttcagCTTCACACACCGGTTGGACAAGGGTTATTGTTGAAAAGCCCTTTGGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGACTCGGGAAGCTACCGCAGATTATTTTATTTGGCATTGCCTCCATCAGTCTACCCATCAGTATGCAAAATGATAAGATCATATTGCATGAGTCCATgtaagttactctttctcaatgtcttacttcctcatctctctaagcactgtacccaactgagctttcctgaaattaatgaagctatcctgtaaatacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA