1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaataatgaagataacttttcattttctccatgcatgatattgcataataaattctgtgtatagttcaatctttaacttaaatccatatgcagctgccttatagtgcctaattcagattagttttctgattcactgcattattattctttcag
species | Zea mays |
transcript | GRMZM2G030902_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|211330813|gb|FL315989.1|FL315989
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGEST: gi|211099331|gb|FL362931.1|FL362931
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTG
EST: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
genomic: GATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaat ... attctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCAGCCGACGATGCAAAGgttgtaaaataatgaagataacttttcattttctccatgcatgatattgcataataaattctgtgtatagttcaatctttaacttaaatccatatgcagctgccttatagtgcctaattcagattagttttctgattcactgcattattattctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG