1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
AGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTTGCATCCTTCAATGAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagctgactggccagccttgttttttgtatgcatcattattatcatggcttttagctgtttctgtattgctcagcgactgatttctgattttccttgttattag
species | Zea mays |
transcript | GRMZM2G030422_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAG GGAAAATGAGCAGCTCTCGAAGTATGGGGATACAAAATCTGCAAGACAAATEST: gi|76288699|gb|DV028267.1|DV028267
genomic: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagct ... ttgttattagGGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAAT
EST: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAG GGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAATEST: gi|18662061|gb|BM501725.1|BM501725
genomic: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagct ... ttgttattagGGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAAT
EST: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAG GGAAAATGAGCAGCTCTCGAAGTATGGCGATACAAAATCTGCAAGACAAATEST: gi|22490728|gb|BU050651.1|BU050651
genomic: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagct ... ttgttattagGGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAAT
EST: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAG GGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAATEST: gi|71766923|gb|DR964860.1|DR964860
genomic: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagct ... ttgttattagGGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAAT
EST: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAG GGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAATEST: gi|18662063|gb|BM501726.1|BM501726
genomic: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagct ... ttgttattagGGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAAT
EST: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAG GGAAAATGAGCAGCTCTCGAAGTATGEST: gi|32928255|gb|CF033067.1|CF033067
genomic: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagct ... ttgttattagGGAAAATGAGCAGCTCTCGAAGTATG
EST: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAG GGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAATEST: gi|18655047|gb|BM499852.1|BM499852
genomic: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagct ... ttgttattagGGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAAT
EST: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAG GGAAAATGAGCAGCTCTCGAAGTATGGGGATACAAAATCTGCAAGACAAAT
genomic: GAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagct ... ttgttattagGGAAAATGAGCAGCTCTCGAAGTATGGTGATACAAAATCTGCAAGACAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTTGCATCCTTCAATGAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACCTTGGAGAATTTTAGgtaaagagctgactggccagccttgttttttgtatgcatcattattatcatggcttttagctgtttctgtattgctcagcgactgatttctgattttccttgttattag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA