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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTGTGTTGGCAATTAATATTTTGGGTCGGTTTTTGTCCAACCGCGATAACAACATAAGgtagatttgctcttgctcttagacagctgatatggttaacatatttttttaatatattggacaaaaatgtggaattaaatttttatatctatttatgttt...

Basic information

species Zea mays
transcript GRMZM2G030144_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030144_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 6
GTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTGTGTTGGCAATTAATATTTTGGGTCGGTTTTTGTCCAACCGCGATAACAACATAAGgtagatttgctcttgctcttagacagctgatatggttaacatatttttttaatatattggacaaaaa-tgtggaattaaatttttatatctatttatgttt----
|||| ||||| |||||| |||| |||||||| ||||||||||||||| ||||||| ||||| |||||| | ||| |||||||||| ||||| ||||| |||||  |      || ||||| |||| ||||| |      ||    | || | | |  || | |||   | |  | | ||| |||  ||  || || | ||     
GTGTTGAGACTATAATGGGCATCGAAGCTACTAGTGGTTTACGTGTGCTGGCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGgtaattcactcttttctcttggacaactgatgtt-----caagcctcttaacttttgtgaataaagggtttaaagtaaaagtttgctagttaattttcttgtaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489954|gb|BU049877.1|BU049877
EST:     GCAATTAATATTTTGGGCCGGTTTTTGTCCAACCGCGATAACAACATAAG                         ATATGTTGCCCTAAACATGCTTATGAAGGCCATTGCCGTAGACACACAAGC
genomic: GCAATTAATATTTTGGGTCGGTTTTTGTCCAACCGCGATAACAACATAAGgtagatttgc ... cccttttcagATATGTTGCCCTAAACATGCTTATGAAGGCCATTGCTGTAGACACACAAGC
EST: gi|18649660|gb|BM498479.1|BM498479
EST:     GCAATTAATATTTTGGGCCGGTTTTTGTCCAACCGCGATAACAACATAAG                         ATATGTTGCCCTAAACATGCTTATGAAGGCCATTGCCGTAGACACACAAGC
genomic: GCAATTAATATTTTGGGTCGGTTTTTGTCCAACCGCGATAACAACATAAGgtagatttgc ... cccttttcagATATGTTGCCCTAAACATGCTTATGAAGGCCATTGCTGTAGACACACAAGC