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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGGACTTTTCTATTTCTCGTGCATCTGTAGAATGGGGCATTCCGGTGCCAAACGATACCAAGCAGACAATATATGTGTGGTTTGATGCTCTATTAGGgtatgtttctcttttctgcacctgctcatttgcatatggttaataatggagacttgctattttatgtttttataactcattctgttgtatatgtattttt...

Basic information

species Zea mays
transcript GRMZM2G029055_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 5
TAAGGGACTTTTCTATTTCTCGTGCATCTGTAGAATGGGGCATTCCGGTGCCAAACGATACCAAGCAGACAATATATGTGTGGTTTGATGCTCTATTAGGgtatgtttctct-tttctgcacctgctcatttgcatatggttaataatggagacttgctattttatgtttttataactcattctgttgtatatgtattttt---
|||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| || ||||| ||||||||||| ||||||||||||||  |||||||||||||||||||  ||||  || || | |||     |||  |  |  ||   ||| |   |  |  |  ||||| |  |     || ||   | ||||| |   
TAAGGGACTTCTCTATTTCCCGTGCATCTGTAGAGTGGGGTATTCCGGTGCCAAATGACACCAAACAGACAATATACGTGTGGTTTGATGCATTATTAGGgtatgtttctctgcttctttacatgat-attcattaatgtgtgctcctgtttactagtcttgctgggaatttattatac---tagtcgtgcttttatttcttcg

upper sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
TAAGGGACTTTTCTATTTCTCGTGCATCTGTAGAATGGGGCATTCCGGTGCCAAACGATACCAAGCAGACAATATATGTGTGGTTTGATGCTCTATTAGGgtatgtttctcttttctgcacctgctcatttgcatatggttaataatggagacttgctattttatgt---ttttataactcattctgttgtatatgtattttt
| ||||| ||||||||||| || |||||||| || ||||||||||| || || || || | ||||||||| ||||| || |||||||||||| || | |||||   || |   ||  |  |    | ||||  || | |  | |    |||  ||   | || |  |    ||  |   |||||   |||  |   |   |  
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttttcctttagttcggaattattt-tatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct--

upper sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S66_139V6.1 (Physcomitrella patens), 5'ss of exon 5
TAAGGGACTTTTCTATTTCTCGTGCATCTGTAGAATGGGGCATTCCGGTGCCAAACGATACCAAGCAGACAATATATGTGTGGTTTGATGCTCTATTAGGgtatgtttctcttttctgcacctgctcatttgcatatggttaataatggagacttgctattttatgtttttataactcattctgttgtatatgtattttt-------
|  | || |||||||| || || ||| | ||||||||||| ||||| ||||||| | |  | ||||| || || ||||||||||||||||||||  | |||||     || |    |  || |  ||  |  | | |  |  |     | | | | ||  ||  | ||| | |  | |||  | | | |  || |||  |       
TGCGAGATTTTTCTATCTCGCGAGCAGCAGTAGAATGGGGTATTCCTGTGCCAACCAACCCAAAGCAAACTATCTATGTGTGGTTTGATGCTCTGCTTGGgtaccacgctttcacttttacttcttc--tctcttttcctctac----gcggccttctccttgctatttctgtc-cacatggtctgggaagtgaattgctgtaatct